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Opn4 Gene Detail
Summary
  • Symbol
    Opn4
  • Name
    opsin 4 (melanopsin)
  • Synonyms
    1110007J02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1353425
    NCBI Gene: 30044
  • Gene Overview
    MyGene.info: OPN4
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:34590618-34600142 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 20.83 cM, cytoband B
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    130 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1353425
protein coding gene Chr14:34590618-34600142 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021178
protein coding gene Chr14:27950633-27960145 (-)
A/J MGP_AJ_G0021126
protein coding gene Chr14:26878757-26888291 (-)
AKR/J MGP_AKRJ_G0021103
protein coding gene Chr14:28064237-28073766 (-)
BALB/cJ MGP_BALBcJ_G0021130
protein coding gene Chr14:27057059-27066590 (-)
C3H/HeJ MGP_C3HHeJ_G0020913
protein coding gene Chr14:27990360-27999977 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021562
protein coding gene Chr14:29020083-29029619 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019124
protein coding gene Chr14:26892029-26901791 (-)
CAST/EiJ MGP_CASTEiJ_G0020438
protein coding gene Chr14:27806923-27816433 (-)
CBA/J MGP_CBAJ_G0020879
protein coding gene Chr14:30070822-30080343 (-)
DBA/2J MGP_DBA2J_G0021002
protein coding gene Chr14:26907983-26917505 (-)
FVB/NJ MGP_FVBNJ_G0020986
protein coding gene Chr14:26865829-26875353 (-)
LP/J MGP_LPJ_G0021071
protein coding gene Chr14:28279816-28289328 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021012
protein coding gene Chr14:29210456-29219977 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021595
protein coding gene Chr14:27905731-27915252 (-)
PWK/PhJ MGP_PWKPhJ_G0020186
protein coding gene Chr14:26396861-26406392 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020010
protein coding gene Chr14:27509126-27518643 (-)
WSB/EiJ MGP_WSBEiJ_G0020493
protein coding gene Chr14:27951429-27960969 (-)



Homology
more
  • Human Ortholog
    OPN4, opsin 4
  • Vertebrate Orthologs
    9
  • Human Ortholog
    OPN4, opsin 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MOP
  • Links
    NCBI Gene ID: 94233
    neXtProt AC: NX_Q9UHM6
    UniProt: Q9UHM6

  • Chr Location
    10q23.2; chr10:86653495-86666460 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    12 phenotypes from 5 alleles in 5 genetic backgrounds
    16 phenotypes from multigenic genotypes
    102 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous inactivation of this gene results in absent intrinsic inner retinal photosensitivity, abnormal pupillary reflex, and abnormal circadian rhythms.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
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    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 30044 NCBI Gene Model | MGI Sequence Detail 9525 C57BL/6J ±  kb
    transcript NM_001128599 RefSeq | MGI Sequence Detail 2259 Not Specified  
    polypeptide Q9QXZ9 UniProt | EBI | MGI Sequence Detail 521 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR017452 GPCR, rhodopsin-like, 7TM
      IPR000276 G protein-coupled receptor, rhodopsin-like
      IPR001760 Opsin
      IPR027430 Visual pigments (opsins) retinal binding site
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 7
      Primer pair 2
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2685379
    References
    more
    • Summaries
      All 152
      Developmental Gene Expression 14
      Gene Ontology 10
      Phenotypes 102
    • Earliest
      J:59329 Provencio I, et al., A novel human opsin in the inner retina. J Neurosci. 2000 Jan 15;20(2):600-5
    • Latest
      J:265843 Chowdhury R, et al., The Trim family of genes and the retina: Expression and functional characterization. PLoS One. 2018;13(9):e0202867

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory