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Cabp1 Gene Detail
Summary
  • Symbol
    Cabp1
  • Name
    calcium binding protein 1
  • Synonyms
    caldendrin
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352750
    NCBI Gene: 29867
  • Gene Overview
    MyGene.info: CABP1
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:115168691-115194381 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 55.99 cM, cytoband F
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    166 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1352750
protein coding gene Chr5:115168689-115194381 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029960
protein coding gene Chr5:118006964-118034626 (-)
A/J MGP_AJ_G0029925
protein coding gene Chr5:113331786-113357304 (-)
AKR/J MGP_AKRJ_G0029863
protein coding gene Chr5:116948351-116973641 (-)
BALB/cJ MGP_BALBcJ_G0029936
protein coding gene Chr5:114730510-114756193 (-)
C3H/HeJ MGP_C3HHeJ_G0029655
protein coding gene Chr5:117465397-117492916 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030390
protein coding gene Chr5:122557957-122585481 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027617
protein coding gene Chr5:108106557-108133437 (-)
CAST/EiJ MGP_CASTEiJ_G0029064
protein coding gene Chr5:116384899-116410871 (-)
CBA/J MGP_CBAJ_G0029623
protein coding gene Chr5:127257639-127292459 (-)
DBA/2J MGP_DBA2J_G0029773
protein coding gene Chr5:113403140-113428763 (-)
FVB/NJ MGP_FVBNJ_G0029729
protein coding gene Chr5:112216103-112246086 (-)
LP/J MGP_LPJ_G0029861
protein coding gene Chr5:118576336-118601612 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029760
protein coding gene Chr5:131593919-131623428 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030431
protein coding gene Chr5:116423139-116449223 (-)
PWK/PhJ MGP_PWKPhJ_G0028777
protein coding gene Chr5:112063964-112091381 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028615
protein coding gene Chr5:113973815-113999122 (-)
WSB/EiJ MGP_WSBEiJ_G0029139
protein coding gene Chr5:117009055-117037607 (-)



Homology
more
  • Human Ortholog
    CABP1, calcium binding protein 1
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CABP1, calcium binding protein 1
    Orthology source: HGNC
  • Synonyms
    CALBRAIN, HCALB_BR
  • Links
    NCBI Gene ID: 9478
    neXtProt AC: NX_Q9NZU7
    UniProt: Q9NZU7

  • Chr Location
    12q24.31; chr12:120640552-120680869 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotypes from 3 alleles in 4 genetic backgrounds
    20 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knockout allele are viable and fertile and show no apparent motor deficits, but they are affected in the transmission of responses to light through the retinal circuits.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 29867 NCBI Gene Model | MGI Sequence Detail 25691 C57BL/6J ±  kb
    transcript NM_001310712 RefSeq | MGI Sequence Detail 1635 C67BL/6*  
    polypeptide Q9JLK7 UniProt | EBI | MGI Sequence Detail 227 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 11
      cDNA 11

      Microarray probesets 2
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 3
      Gene Ontology 6
      Phenotypes 20
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:272704 Yang T, et al., Functions of CaBP1 and CaBP2 in the peripheral auditory system. Hear Res. 2018 Jul;364:48-58

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    06/04/2019
    MGI 6.14
    The Jackson Laboratory