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Cabp2
Gene Detail
Symbol

Name
ID
Cabp2
calcium binding protein 2
MGI:1352749
Feature Type
protein coding gene
Genetic Map
Chromosome 19
3.79 cM, cytoband A
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:4081578-4087340 bp, + strand
From VEGA annotation of GRCm38

  5763 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8487  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: CABP2
Gene Tree: Cabp2

Human
homologs
CABP2, calcium binding protein 2
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 51475
neXtProt AC: NX_Q9NPB3

Human Synonyms: DFNB93

Human Chr (Location): 11q13.1; chr11:67518947-67523614 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human CABP2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cabp2 interacts with 23 markers (Mir7-1, Mir100, Mir128-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Component cytoplasm, Golgi apparatus, ...
Function calcium ion binding, metal ion binding
External Resources: FuncBase
Expression
cDNA source data(4)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: ZFIN cabp2a    NEW 
Molecular
reagents
All nucleic(4) cDNA(4)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000034965 (Evidence)
Ensembl Gene Model ENSMUSG00000024857 (Evidence)
Entrez Gene 29866 (Evidence)
UniGene 46268
DFCI TC1585538
DoTS DT.50315617, DT.91337326, DT.91337327
NIA Mouse Gene Index U038757
Consensus CDS Project CCDS29413.2, CCDS50348.1, CCDS50349.1
International Mouse Phenotyping Consortium Status Cabp2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034965 VEGA Gene Model | MGI Sequence Detail 5763 C57BL/6J ±  kb
transcript OTTMUST00000088903 VEGA | MGI Sequence Detail 911 Not Applicable 
polypeptide OTTMUSP00000048519 VEGA | MGI Sequence Detail 221 Not Applicable 

For the selected sequences
All sequences(80) RefSeq(42) UniProt(5)
Polymorphisms
SNPs within 2kb(39 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR015754 Calcium binding protein 2
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand domain pair
Protein Ontology PR:000004934 calcium-binding protein 2
References
(Earliest) J:59389 Haeseleer F, et al., Five members of a novel Ca(2+)-binding protein (CABP) subfamily with similarity to calmodulin. J Biol Chem. 2000 Jan 14;275(2):1247-60
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory