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Dpf1 Gene Detail
Summary
  • Symbol
    Dpf1
  • Name
    D4, zinc and double PHD fingers family 1
  • Synonyms
    Neud4, neuro-d4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352748
    NCBI Gene: 29861
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:29303959-29317592 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 16.94 cM, cytoband A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    33 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1352748
 protein coding gene Chr7:29303951-29318243 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031982
 protein coding gene Chr7:28224237-28239944 (+)
A/J MGP_AJ_G0031960
 protein coding gene Chr7:27477318-27491037 (+)
AKR/J MGP_AKRJ_G0031893
 protein coding gene Chr7:28197273-28210987 (+)
BALB/cJ MGP_BALBcJ_G0031967
 protein coding gene Chr7:27676599-27690294 (+)
C3H/HeJ MGP_C3HHeJ_G0031686
 protein coding gene Chr7:28595487-28609257 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032432
 protein coding gene Chr7:29125363-29139291 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029482
 protein coding gene Chr7:28530537-28544343 (+)
CAST/EiJ MGP_CASTEiJ_G0031020
 protein coding gene Chr7:21859961-21876891 (+)
CBA/J MGP_CBAJ_G0031652
 protein coding gene Chr7:30497281-30511289 (+)
DBA/2J MGP_DBA2J_G0031804
 protein coding gene Chr7:27218282-27231984 (+)
FVB/NJ MGP_FVBNJ_G0031761
 protein coding gene Chr7:27335985-27349695 (+)
LP/J MGP_LPJ_G0031884
 protein coding gene Chr7:28527624-28541438 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031796
 protein coding gene Chr7:29861431-29875152 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032461
 protein coding gene Chr7:27684360-27698053 (+)
PWK/PhJ MGP_PWKPhJ_G0030746
 protein coding gene Chr7:22275458-22289315 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030579
 protein coding gene Chr7:18688871-18707776 (+)
WSB/EiJ MGP_WSBEiJ_G0031130
 protein coding gene Chr7:28060919-28077063 (+)



Homology
more
  • Human Ortholog
    DPF1, double PHD fingers 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    DPF1, double PHD fingers 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAF45b, NEUD4, neuro-d4
  • Links
    NCBI Gene ID: 8193
    neXtProt AC: NX_Q92782
    UniProt: Q92782

  • Chr Location
    19q13.2; chr19:38211006-38229714 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    295
  • Tissues
    187
  • cDNA Data
    11
  • Literature Summary
    12
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 29861 NCBI Gene Model | MGI Sequence Detail 13634 C57BL/6J ±  kb
transcript NM_013874 RefSeq | MGI Sequence Detail 2278 C57BL/6  
polypeptide Q9QX66 UniProt | EBI | MGI Sequence Detail 387 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 11
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 42
    Developmental Gene Expression 12
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:59255 Mertsalov IB, et al., Structure and expression of two members of the d4 gene family in mouse. Mamm Genome. 2000 Jan;11(1):72-4
  • Latest
    J:264370 Sima J, et al., Eda-activated RelB recruits an SWI/SNF (BAF) chromatin-remodeling complex and initiates gene transcription in skin appendage formation. Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):8173-8178
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/08/2019
MGI 6.14 		The Jackson Laboratory