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Cspg5
Gene Detail
 Symbol
Name
ID
Cspg5
chondroitin sulfate proteoglycan 5
MGI:1352747
Synonyms CALEB, neuroglycan C, NGC
Feature Type protein coding gene
Genetic Map
Chromosome 9
59.89 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:110243783-110262575 bp, + strand
From Ensembl annotation of GRCm38

  18793 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4795  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: Cspg5

Human
homologs
Human Homolog CSPG5, chondroitin sulfate proteoglycan 5 (neuroglycan C)
NCBI Gene ID 10675
neXtProt AC  NX_O95196
Human Synonyms  NGC
Human Chr (Location)  3p21.3; chr3:47562238-47580240 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(21) : Gene trapped(19) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous null mice display decreased spontaneous postsynaptic currents, increased paired-pulse ratios, and reduced long term depression during early postnatal developmental stages.
 
Interactions
Cspg5 interacts with 65 markers (Mir7-1, Mir19a, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process cell differentiation, multicellular organismal development, ...
Component endoplasmic reticulum, Golgi apparatus, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (41)    Tissues (28)    Images (13)
Theiler Stages: 19, 23, 28
Assay TypeResults
RNA in situ 41
cDNA source data(21)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(24) cDNA(24)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000032482 (Evidence)
Entrez Gene29873 (Evidence)
UniGene38496
DFCITC1579704, TC1592470, TC1595503
DoTSDT.101200289, DT.526208, DT.91354184, DT.94221346, DT.99863527
NIA Mouse Gene IndexU011062
Consensus CDS ProjectCCDS52936.1
International Mouse Knockout Project StatusCspg5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032482 Ensembl Gene Model | MGI Sequence Detail 18793 C57BL/6J ±  kb
transcript ENSMUST00000035058 Ensembl | MGI Sequence Detail 3870 Not Applicable 
polypeptide ENSMUSP00000035058 Ensembl | MGI Sequence Detail 566 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(78 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010555 Chondroitin sulphate attachment
InterPro IPR000742 Epidermal growth factor-like domain
InterPro IPR009505 Neural chondroitin sulphate proteoglycan cytoplasmic
Protein Ontology PR:000005954 chondroitin sulfate proteoglycan 5
References (Earliest) J:59346 Aono S, et al., Genomic organization and expression pattern of mouse neuroglycan C in the cerebellar development. J Biol Chem. 2000 Jan 7;275(1):337-42
(Latest) J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
All references(35)
Other
accession IDs
MGI:2143104

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory