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Capn11 Gene Detail
Summary
  • Symbol
    Capn11
  • Name
    calpain 11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1352490
    NCBI Gene: 268958
Location & Maps
more
  • Sequence Map
    Chr17:45630204-45659325 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      29122 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 22.59 cM, cytoband B3
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CAPN11, calpain 11
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CAPN11, calpain 11
    Orthology source: HomoloGene, HGNC
  • Synonyms
    calpain11
  • Links
    NCBI Gene ID: 11131
    neXtProt AC: NX_Q9UMQ6

  • Chr Location
    6p21.1; chr6:44158811-44184402 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031350 VEGA Gene Model | MGI Sequence Detail 29122 C57BL/6J ±  kb
transcript OTTMUST00000077670 VEGA | MGI Sequence Detail 2591 Not Applicable  
polypeptide OTTMUSP00000041130 VEGA | MGI Sequence Detail 714 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    130 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 7
    Primer pair 1
    Other 2

    Microarray probesets 2
References
more
  • Summaries
    All 26
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:58554 Dear TN, et al., Diverse mRNA expression patterns of the mouse calpain genes Capn5, Capn6 and Capn11 during development. Mech Dev. 1999 Dec;89(1-2):201-9
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory