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Slco4a1
Gene Detail
Symbol

Name
ID
Slco4a1
solute carrier organic anion transporter family, member 4a1
MGI:1351866
Synonyms
MGC:28799, MGC:28824, OATP-E, Slc21a12
Feature Type
protein coding gene
Genetic Map
Chromosome 2
102.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:180456245-180474867 bp, + strand
From VEGA annotation of GRCm38

  18623 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9482  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLCO4A1
Gene Tree: Slco4a1

Human
homologs
SLCO4A1, solute carrier organic anion transporter family, member 4A1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 28231
neXtProt AC: NX_Q96BD0

Human Synonyms: OATP1, OATP4A1, OATPE, OATP-E, OATPRP1, POAT, SLC21A12

Human Chr (Location): 20q13.33; chr20:62642445-62685830 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(4) Targeted(4)
Incidental mutations (data from APF , CvDC )
Interactions
Slco4a1 interacts with 108 markers (Mir1a-1, Mir1a-2, Mir19a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (4 records)
Data Summary: Results (112)    Tissues (104)    Images (5)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 104
RT-PCR 8
cDNA source data(28)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase slco4a1    NEW 
Molecular
reagents
All nucleic(31) cDNA(29) Primer pair(2)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000016331 (Evidence)
Ensembl Gene Model ENSMUSG00000038963 (Evidence)
Entrez Gene 108115 (Evidence)
UniGene 133687
DFCI TC1578587, TC1591831
DoTS DT.99846793, DT.60104273, DT.101375124, DT.91298269
NIA Mouse Gene Index U002955
Consensus CDS Project CCDS17176.1
International Mouse Phenotyping Consortium Status Slco4a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016331 VEGA Gene Model | MGI Sequence Detail 18623 C57BL/6J ±  kb
transcript OTTMUST00000039237 VEGA | MGI Sequence Detail 3010 Not Applicable 
polypeptide OTTMUSP00000017537 VEGA | MGI Sequence Detail 723 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(11) UniProt(1)
Polymorphisms
SNPs within 2kb(229 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002350 Kazal domain
InterPro IPR020846 Major facilitator superfamily domain
InterPro IPR004156 Organic anion transporter polypeptide OATP
Protein Ontology PR:000015229 solute carrier organic anion transporter family member 4A1
References
(Earliest) J:93300 Blackshaw S, et al., Genomic analysis of mouse retinal development. PLoS Biol. 2004 Oct;2(9):E247
(Latest) J:167825 Braun D, et al., Developmental and cell type-specific expression of thyroid hormone transporters in the mouse brain and in primary brain cells. Glia. 2011 Mar;59(3):463-71
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory