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Cstf3 Gene Detail
Summary
  • Symbol
    Cstf3
  • Name
    cleavage stimulation factor, 3' pre-RNA, subunit 3
  • Synonyms
    4732468G05Rik, MGC:6373
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351825
    NCBI Gene: 228410
  • Gene Overview
    MyGene.info: CSTF3
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:104590523-104665429 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 54.84 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    432 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1351825
protein coding gene Chr2:104590484-104665429 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026218
protein coding gene Chr2:106711181-106787341 (+)
A/J MGP_AJ_G0026179
protein coding gene Chr2:102252654-102326750 (+)
AKR/J MGP_AKRJ_G0026159
protein coding gene Chr2:105033008-105112031 (+)
BALB/cJ MGP_BALBcJ_G0026188
protein coding gene Chr2:102533373-102608006 (+)
C3H/HeJ MGP_C3HHeJ_G0025939
protein coding gene Chr2:105361428-105441054 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026639
protein coding gene Chr2:110212372-110294624 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024026
protein coding gene Chr2:98064792-98138989 (+)
CAST/EiJ MGP_CASTEiJ_G0025403
protein coding gene Chr2:105864127-105945764 (+)
CBA/J MGP_CBAJ_G0025916
protein coding gene Chr2:113990048-114079201 (+)
DBA/2J MGP_DBA2J_G0026054
protein coding gene Chr2:101802083-101877265 (+)
FVB/NJ MGP_FVBNJ_G0026017
protein coding gene Chr2:100787012-100861804 (+)
LP/J MGP_LPJ_G0026157
protein coding gene Chr2:106814791-106896478 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026041
protein coding gene Chr2:117863515-117943728 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026693
protein coding gene Chr2:105231564-105310780 (+)
PWK/PhJ MGP_PWKPhJ_G0025138
protein coding gene Chr2:101334184-101412086 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024939
protein coding gene Chr2:104469283-104544337 (+)
WSB/EiJ MGP_WSBEiJ_G0025470
protein coding gene Chr2:105972083-106048874 (+)



Homology
more
  • Human Ortholog
    CSTF3, cleavage stimulation factor subunit 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CSTF3, cleavage stimulation factor subunit 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CSTF-77
  • Links
    NCBI Gene ID: 1479
    neXtProt AC: NX_Q12996
    UniProt: Q12996

  • Chr Location
    11p13; chr11:33084584-33161491 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 1014
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CSTF3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000027176 Ensembl Gene Model | MGI Sequence Detail 74907 C57BL/6J ±  kb
    transcript ENSMUST00000028599 Ensembl | MGI Sequence Detail 2817 Not Applicable  
    polypeptide ENSMUSP00000028599 Ensembl | MGI Sequence Detail 717 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 12
      cDNA 12

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:2139490, MGI:2444669
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 2
      Gene Ontology 4
      Phenotypes 13
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory