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Abcf1 Gene Detail
Summary
  • Symbol
    Abcf1
  • Name
    ATP-binding cassette, sub-family F (GCN20), member 1
  • Synonyms
    Abc50, D17Wsu166e, GCN20
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351658
    NCBI Gene: 224742
  • Gene Overview
    MyGene.info: ABCF1
Location & Maps
more
  • Sequence Map
    Chr17:35956819-35969761 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      12943 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.80 cM
  • Mapping Data
    5 experiments
Homology
more
  • Human Ortholog
    ABCF1, ATP binding cassette subfamily F member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ABCF1, ATP binding cassette subfamily F member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ABC27, ABC50
  • Links
    NCBI Gene ID: 23
    neXtProt AC: NX_Q8NE71

  • Chr Location
    6p21.33; chr6:30571393-30591532 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 849
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: ABCF1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    19
  • Gene trapped
    14
  • Targeted
    5
  • Genomic Mutations
    1 involving Abcf1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037427 VEGA Gene Model | MGI Sequence Detail 12943 C57BL/6J ±  kb
transcript OTTMUST00000096569 VEGA | MGI Sequence Detail 3161 Not Applicable  
polypeptide OTTMUSP00000053966 VEGA | MGI Sequence Detail 837 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    8 Sequences
  • Protein Ontology
    PR:000003569 ATP-binding cassette sub-family F member 1
  • InterPro Domains
    IPR003593 AAA+ ATPase domain
    IPR017871 ABC transporter, conserved site
    IPR032781 ABC-transporter extension domain
    IPR003439 ABC transporter-like
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
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  • All nucleic 245
    cDNA 244
    Primer pair 1

    Microarray probesets 10
Other
Accession IDs
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MGD-MRK-36426, MGI:107849, MGI:2147001
References
more
  • Summaries
    All 38
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/13/2016
MGI 6.05
The Jackson Laboratory