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Abcf2
Gene Detail
Symbol

Name
ID
Abcf2
ATP-binding cassette, sub-family F (GCN20), member 2
MGI:1351657
Synonyms
0710005O05Rik, Drr3
Feature Type
protein coding gene
Genetic Map
Chromosome 5
11.93 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr5:24565341-24577467 bp, - strand
From NCBI annotation of GRCm38

  12127 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21408  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

HCOP human homology predictions: ABCF2
Gene Tree: Abcf2

Human
homologs
ABCF2, ATP-binding cassette, sub-family F (GCN20), member 2
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 10061
neXtProt AC: NX_Q9UG63

Human Synonyms: ABC28, EST133090, HUSSY18, HUSSY-18

Human Chr (Location): 7q36; chr7:151207830-151227374 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(18) : Gene trapped(14) Targeted(4)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Abcf2 interacts with 128 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process biological_process
Component membrane, mitochondrion
Function ATPase activity, ATP binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (113)    Tissues (108)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 113
cDNA source data(151)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA ABCF2 ZFIN abcf2a, abcf2b    NEW 
Molecular
reagents
All nucleic(153) cDNA(152) Primer pair(1)
Microarray probesets(6)
Other database
links
Ensembl Gene Model ENSMUSG00000028953 (Evidence)
Entrez Gene 27407 (Evidence)
UniGene 21629
DFCI TC1643708, TC1573493, TC1759391
DoTS DT.97352152, DT.99865046
NIA Mouse Gene Index U363090, U026000
Consensus CDS Project CCDS19125.1
International Mouse Phenotyping Consortium Status Abcf2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 27407 NCBI Gene Model | MGI Sequence Detail 12127 C57BL/6J ±  kb
transcript NM_013853 RefSeq | MGI Sequence Detail 2573 C57BL/6 
polypeptide Q99LE6 UniProt | EBI | MGI Sequence Detail 628 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(8) UniProt(2)
Polymorphisms
SNPs within 2kb(80 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003593 AAA+ ATPase domain
InterPro IPR017871 ABC transporter, conserved site
InterPro IPR003439 ABC transporter-like
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
Protein Ontology PR:000029256 ATP-binding cassette sub-family F member 2
Graphical View of Protein Domain Structure
References
(Earliest) J:35907 Sam M, et al., A novel family of repeat sequences in the mouse genome responsive to retinoic acid. Mamm Genome. 1996 Oct;7(10):741-8
(Latest) J:207897 Krahling AM, et al., CRIS-a novel cAMP-binding protein controlling spermiogenesis and the development of flagellar bending. PLoS Genet. 2013 Dec;9(12):e1003960
All references(44)
Other
accession IDs
MGI:1298380, MGI:1924146

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory