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Fam50a Gene Detail
Summary
  • Symbol
    Fam50a
  • Name
    family with sequence similarity 50, member A
  • Synonyms
    D0HXS9928E, XAP-5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351626
    NCBI Gene: 108160
  • Gene Overview
    MyGene.info: FAM50A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:74313033-74320149 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 37.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1351626
protein coding gene ChrX:74313033-74320149 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035841
protein coding gene ChrX:70112497-70119706 (+)
A/J MGP_AJ_G0035822
protein coding gene ChrX:70297514-70304365 (+)
AKR/J MGP_AKRJ_G0035747
protein coding gene ChrX:72199147-72206189 (+)
BALB/cJ MGP_BALBcJ_G0035807
protein coding gene ChrX:69324085-69331390 (+)
C3H/HeJ MGP_C3HHeJ_G0035512
protein coding gene ChrX:70587326-70595286 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036337
protein coding gene ChrX:72274977-72282819 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033181
protein coding gene ChrX:69363583-69370287 (+)
CAST/EiJ MGP_CASTEiJ_G0034803
protein coding gene ChrX:55970040-55976926 (+)
CBA/J MGP_CBAJ_G0035487
protein coding gene ChrX:74273517-74280376 (+)
DBA/2J MGP_DBA2J_G0035644
protein coding gene ChrX:69757344-69764237 (+)
FVB/NJ MGP_FVBNJ_G0035588
protein coding gene ChrX:69101479-69108359 (+)
LP/J MGP_LPJ_G0035729
protein coding gene ChrX:70891809-70898912 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035626
protein coding gene ChrX:76834991-76841909 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036359
protein coding gene ChrX:69930087-69937912 (+)
PWK/PhJ MGP_PWKPhJ_G0034502
protein coding gene ChrX:53929366-53936290 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034336
protein coding gene ChrX:56836627-56843498 (+)
WSB/EiJ MGP_WSBEiJ_G0034944
protein coding gene ChrX:69214733-69221776 (+)



Homology
more
  • Human Ortholog
    FAM50A, family with sequence similarity 50 member A
  • Vertebrate Orthologs
    5
  • Human Ortholog
    FAM50A, family with sequence similarity 50 member A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    9F, DXS9928E, HXC26, HXC-26, XAP5
  • Links
    NCBI Gene ID: 9130
    neXtProt AC: NX_Q14320
    UniProt: Q14320

  • Chr Location
    Xq28; chrX:154444126-154450654 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 108160 NCBI Gene Model | MGI Sequence Detail 7117 C57BL/6J ±  kb
transcript NM_138607 RefSeq | MGI Sequence Detail 1383 C57BL/6  
polypeptide Q9WV03 UniProt | EBI | MGI Sequence Detail 339 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 3
References
more
  • Summaries
    All 21
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:58261 Sedlacek Z, et al., Human and mouse XAP-5 and XAP-5-like (X5L) genes: identification of an ancient functional retroposon differentially expressed in testis. Genomics. 1999 Oct 15;61(2):125-32
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory