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Fam50a
Gene Detail
 Symbol
Name
ID
Fam50a
family with sequence similarity 50, member A
MGI:1351626
Synonyms D0HXS9928E, XAP-5
Feature Type protein coding gene
Genetic Map
Chromosome X
37.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:74313033-74320149 bp, + strand
From VEGA annotation of GRCm38

  7117 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3448  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 cattle; 1 dog

Gene Tree: Fam50a

Human
homologs
Human Homolog FAM50A, family with sequence similarity 50, member A
NCBI Gene ID 9130
neXtProt AC  NX_Q14320
Human Synonyms  9F, DXS9928E, HXC26, HXC-26, XAP5
Human Chr (Location)  Xq28; chrX:154444126-154450654 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Interactions
Fam50a interacts with 42 markers (Mir22, Mir30a, Mir30b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Component nucleus
Function poly(A) RNA binding
Expression
Literature Summary: (1 records)
Data Summary: Results (1)    Tissues (1)   
Theiler Stages: 28
Assay TypeResults
RNA in situ 1
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(14) cDNA(14)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000017658 (Evidence)
Ensembl Gene ModelENSMUSG00000001962 (Evidence)
Entrez Gene108160 (Evidence)
UniGene4370
DFCITC1585698
DoTSDT.526513, DT.87042783
NIA Mouse Gene IndexU019959
Consensus CDS ProjectCCDS41021.1
International Mouse Knockout Project StatusFam50a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017658 VEGA Gene Model | MGI Sequence Detail 7117 C57BL/6J ±  kb
transcript OTTMUST00000042856 VEGA | MGI Sequence Detail 1383 Not Applicable 
polypeptide OTTMUSP00000019245 VEGA | MGI Sequence Detail 339 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(2)
Polymorphisms SNPs within 2kb(43 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007005 XAP5 protein
Protein Ontology PR:000029476 protein FAM50A
References (Earliest) J:58261 Sedlacek Z, et al., Human and mouse XAP-5 and XAP-5-like (X5L) genes: identification of an ancient functional retroposon differentially expressed in testis. Genomics. 1999 Oct 15;61(2):125-32
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(25)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory