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Rpl13a Gene Detail
Summary
  • Symbol
    Rpl13a
  • Name
    ribosomal protein L13A
  • Synonyms
    1810026N22Rik, Tstap198-7, tum-antigen, tum-transplantation antigen P198
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351455
    NCBI Gene: 22121
  • Gene Overview
    MyGene.info: RPL13A
Location & Maps
more
  • Sequence Map
    Chr7:45125563-45128745 bp, - strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      3183 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 29.14 cM
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    RPL13A, ribosomal protein L13a
  • Vertebrate Orthologs
    9
  • Human Ortholog
    RPL13A, ribosomal protein L13a
    Orthology source: HomoloGene
  • Synonyms
    L13A, TSTA1
  • Links
    NCBI Gene ID: 23521
    neXtProt AC: NX_P40429

  • Chr Location
    19q13.3; chr19:49487554-49492308 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    57
  • Gene trapped
    55
  • Targeted
    2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 22121 NCBI Gene Model | MGI Sequence Detail 3183 C57BL/6J ±  kb
transcript NM_009438 RefSeq | MGI Sequence Detail 1039 Not Specified  
polypeptide P19253 UniProt | EBI | MGI Sequence Detail 203 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    75 from dbSNP Build 142
  • RFLP
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000014193 60S ribosomal protein L13a
  • InterPro Domains
    IPR005822 Ribosomal protein L13
    IPR023563 Ribosomal protein L13, conserved site
    IPR005755 Ribosomal protein L13, eukaryotic/archaeal
Molecular
Reagents
less
  • All nucleic 936
    Genomic 4
    cDNA 931
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-15284, MGI:1916425, MGI:98856
References
more
  • Summaries
    All 44
    Developmental Gene Expression 3
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:23422 Sibille C, et al., Structure of the gene of tum- transplantation antigen P198: a point mutation generates a new antigenic peptide. J Exp Med. 1990 Jul 1;172(1):35-45
  • Latest
    J:222822 Basu A, et al., Ribosomal protein L13a deficiency in macrophages promotes atherosclerosis by limiting translation control-dependent retardation of inflammation. Arterioscler Thromb Vasc Biol. 2014 Mar;34(3):533-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory