Omd
Gene Detail

Symbol Name ID

Omd osteomodulin MGI:1350918

Synonyms

OSAD, osteoadherin, SLRR2C

Feature Type

protein coding gene

Genetic Map

Chromosome 13

25.33 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr13:49582766-49592609 bp, + strand From Ensembl annotation of GRCm38   9844 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:3677  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 zebrafish

Protein SuperFamily: class II small leucine-rich proteoglycan
Gene Tree: Omd

Human homologs

Human Homolog		OMD, osteomodulin
NCBI Gene ID		4958
neXtProt AC		NX_Q99983
Human Synonyms		OSAD, SLRR2C
Human Chr (Location)		9q22.31; chr9:95176527-95186836 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(4) : Targeted(3) Gene trapped(1)
 

Homozygous mutation of this gene results in impaired cued contextual conditioning behavior.

 

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Process	cell adhesion
Component	extracellular region, proteinaceous extracellular matrix

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (23)    Tissues (17)    Images (5)
Theiler Stages: 17, 20

Assay Type	Results
RNA in situ	23

cDNA source data(13)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(13) cDNA(13)
Microarray probesets(3)

Other database links

Ensembl Gene Model	ENSMUSG00000048368 (Evidence)
Entrez Gene	27047 (Evidence)
UniGene	390589
DFCI	TC1585589
DoTS	DT.101240931, DT.524388
NIA Mouse Gene Index	U014829
Consensus CDS Project	CCDS26504.1
International Mouse Knockout Project Status	Omd

Sequences

Length	Strain/Species
genomic	ENSMUSG00000048368	Ensembl Gene Model | MGI Sequence Detail	9844	C57BL/6J
transcript	ENSMUST00000065494	Ensembl | MGI Sequence Detail	1556	Not Applicable
polypeptide	ENSMUSP00000065706	Ensembl | MGI Sequence Detail	423	Not Applicable

All sequences(16) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(27 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001611	Leucine-rich repeat
InterPro	IPR000372	Leucine-rich repeat-containing N-terminal
Protein Ontology	PR:000011636	osteomodulin

References

(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:185225 Nikdin H, et al., Osteoadherin accumulates in the predentin towards the mineralization front in the developing tooth. PLoS One. 2012;7(2):e31525
All references(29)