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Omd
Gene Detail
Symbol

Name
ID
Omd
osteomodulin
MGI:1350918
Synonyms
OSAD, osteoadherin, SLRR2C
Feature Type
protein coding gene
Genetic Map
Chromosome 13
25.33 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:49582766-49592609 bp, + strand
From Ensembl annotation of GRCm38

  9844 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3677  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

HCOP human homology predictions: OMD
Protein SuperFamily: class II small leucine-rich proteoglycan
Gene Tree: Omd

Human
homologs
OMD, osteomodulin
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 4958
neXtProt AC: NX_Q99983

Human Synonyms: OSAD, SLRR2C

Human Chr (Location): 9q22.31; chr9:92414245-92424554 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Targeted(3)
Incidental mutations (data from Mutagenetix )
 
Homozygous mutation of this gene results in impaired cued contextual conditioning behavior.
 
Interactions
Omd interacts with 43 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process cell adhesion, regulation of bone mineralization
Component extracellular exosome, extracellular matrix, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (23)    Tissues (17)    Images (5)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 23
cDNA source data(13)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(13)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000048368 (Evidence)
Entrez Gene 27047 (Evidence)
UniGene 390589
DFCI TC1585589
DoTS DT.524388, DT.101240931
NIA Mouse Gene Index U014829
Consensus CDS Project CCDS26504.1
International Mouse Phenotyping Consortium Status Omd
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048368 Ensembl Gene Model | MGI Sequence Detail 9844 C57BL/6J ±  kb
transcript ENSMUST00000065494 Ensembl | MGI Sequence Detail 1556 Not Applicable 
polypeptide ENSMUSP00000065706 Ensembl | MGI Sequence Detail 423 Not Applicable 

For the selected sequences
All sequences(18) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(28 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001611 Leucine-rich repeat
InterPro IPR000372 Leucine-rich repeat-containing N-terminal
Protein Ontology PR:000011636 osteomodulin
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:185225 Nikdin H, et al., Osteoadherin accumulates in the predentin towards the mineralization front in the developing tooth. PLoS One. 2012;7(2):e31525
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory