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Vsnl1 Gene Detail
Summary
  • Symbol
    Vsnl1
  • Name
    visinin-like 1
  • Synonyms
    VILIP
  • Feature Type
    protein coding gene
  • IDs
    MGI:1349453
    NCBI Gene: 26950
  • Gene Overview
    MyGene.info: VSNL1
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:11325242-11436613 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 5.58 cM, cytoband A2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    590 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1349453
 protein coding gene Chr12:11325242-11436649 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019600
 protein coding gene Chr12:8520513-8643407 (-)
A/J MGP_AJ_G0019567
 protein coding gene Chr12:8211085-8326362 (-)
AKR/J MGP_AKRJ_G0019537
 protein coding gene Chr12:8751135-8863694 (-)
BALB/cJ MGP_BALBcJ_G0019542
 protein coding gene Chr12:8400466-8514972 (-)
C3H/HeJ MGP_C3HHeJ_G0019348
 protein coding gene Chr12:8545949-8662512 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019991
 protein coding gene Chr12:8809413-8931808 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017618
 protein coding gene Chr12:7978734-8092625 (-)
CAST/EiJ MGP_CASTEiJ_G0018904
 protein coding gene Chr12:8507140-8628524 (-)
CBA/J MGP_CBAJ_G0019319
 protein coding gene Chr12:9435623-9556604 (-)
DBA/2J MGP_DBA2J_G0019432
 protein coding gene Chr12:8178338-8290211 (-)
FVB/NJ MGP_FVBNJ_G0019423
 protein coding gene Chr12:8125900-8240079 (-)
LP/J MGP_LPJ_G0019503
 protein coding gene Chr12:8579631-8697696 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019456
 protein coding gene Chr12:9253523-9367804 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020030
 protein coding gene Chr12:8424503-8539176 (-)
PWK/PhJ MGP_PWKPhJ_G0018670
 protein coding gene Chr12:8275316-8389031 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018460
 protein coding gene Chr12:8512119-8633288 (-)
WSB/EiJ MGP_WSBEiJ_G0018955
 protein coding gene Chr12:8495930-8618299 (-)



Homology
more
  • Human Ortholog
    VSNL1, visinin like 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    VSNL1, visinin like 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HLP3, HPCAL3, HUVISL1, VILIP, VILIP-1
  • Links
    NCBI Gene ID: 7447
    neXtProt AC: NX_P62760
    UniProt: P62760

  • Chr Location
    2p24.2; chr2:17540540-17656439 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    266
  • Tissues
    140
  • cDNA Data
    31
  • Literature Summary
    7
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054459 Ensembl Gene Model | MGI Sequence Detail 111372 C57BL/6J ±  kb
transcript ENSMUST00000220506 Ensembl | MGI Sequence Detail 1699 Not Applicable  
polypeptide ENSMUSP00000152711 Ensembl | MGI Sequence Detail 191 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 36
    cDNA 31
    Primer pair 2
    Other 3

    Microarray probesets 5
References
more
  • Summaries
    All 40
    Developmental Gene Expression 7
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:58153 Mathisen PM, et al., Visinin-like protein (VILIP) is a neuron-specific calcium-dependent double-stranded RNA-binding protein. J Biol Chem. 1999 Oct 29;274(44):31571-6
  • Latest
    J:274879 van Eif VWW, et al., Transcriptome analysis of mouse and human sinoatrial node cells reveals a conserved genetic program. Development. 2019 Apr 25;146(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/08/2019
MGI 6.14 		The Jackson Laboratory