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Vat1 Gene Detail
Summary
  • Symbol
    Vat1
  • Name
    vesicle amine transport 1
  • Synonyms
    VAT-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1349450
    NCBI Gene: 26949
  • Gene Overview
    MyGene.info: VAT1
  • Alliance
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:101458748-101466199 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 65.10 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    24 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1349450
protein coding gene Chr11:101458745-101466230 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019204
protein coding gene Chr11:104326772-104334237 (-)
A/J MGP_AJ_G0019172
protein coding gene Chr11:99940573-99947990 (-)
AKR/J MGP_AKRJ_G0019141
protein coding gene Chr11:103047078-103054561 (-)
BALB/cJ MGP_BALBcJ_G0019146
protein coding gene Chr11:100433033-100440518 (-)
C3H/HeJ MGP_C3HHeJ_G0018955
protein coding gene Chr11:103223632-103231115 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019595
protein coding gene Chr11:107601426-107608911 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017221
protein coding gene Chr11:97338356-97346005 (-)
CAST/EiJ MGP_CASTEiJ_G0018509
protein coding gene Chr11:104202313-104209947 (-)
CBA/J MGP_CBAJ_G0018924
protein coding gene Chr11:112029980-112037465 (-)
DBA/2J MGP_DBA2J_G0019036
protein coding gene Chr11:99462593-99470076 (-)
FVB/NJ MGP_FVBNJ_G0019026
protein coding gene Chr11:99004937-99012355 (-)
LP/J MGP_LPJ_G0019105
protein coding gene Chr11:104866351-104873812 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019057
protein coding gene Chr11:111585912-111593395 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019633
protein coding gene Chr11:103376705-103384186 (-)
PWK/PhJ MGP_PWKPhJ_G0018272
protein coding gene Chr11:100524848-100532178 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018064
protein coding gene Chr11:103100078-103110853 (-)
WSB/EiJ MGP_WSBEiJ_G0018558
protein coding gene Chr11:103372024-103380668 (-)



Homology
more
  • Human Ortholog
    VAT1, vesicle amine transport 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    VAT1, vesicle amine transport 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    VATI
  • Links
    NCBI Gene ID: 10493
    neXtProt AC: NX_Q99536
    UniProt: Q99536

  • Chr Location
    17q21.31; chr17:43014605-43022442 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 26949 NCBI Gene Model | MGI Sequence Detail 7452 C57BL/6J ±  kb
transcript NM_012037 RefSeq | MGI Sequence Detail 2732 C57BL/6  
polypeptide Q62465 UniProt | EBI | MGI Sequence Detail 406 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 146
    Genomic 2
    cDNA 144

    Microarray probesets 3
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 12
  • Earliest
    J:57580 Hayess K, et al., Mammalian protein homologous to VAT-1 of Torpedo californica: isolation from Ehrlich ascites tumor cells, biochemical characterization, and organization of its gene. J Cell Biochem. 1998 Jun 1;69(3):304-15
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory