Ddx3y
Gene Detail

Symbol Name ID

Ddx3y DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked MGI:1349406

Synonyms

8030469F12Rik, D1Pas1-rs1, Dby

Feature Type

protein coding gene

Genetic Map

Chromosome Y
cytoband p

Mapping data(2)

Sequence Map

ChrY:1260715-1286613 bp, - strand From NCBI annotation of GRCm38   25899 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:130081  Vertebrate Homology Class
1 mouse; 1 rat

Protein SuperFamily: ATP-dependent RNA helicase
Gene Tree: Ddx3y

Alleles and phenotypes

All alleles(6) : Targeted(2) Gene trapped(4)

Gene Ontology (GO) classifications

All GO classifications: (11 annotations)

Component	cytoplasm, nucleus
Function	ATP binding, ATP-dependent helicase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (6 records)
Data Summary: Results (23)    Tissues (9)    Images (1)
Theiler Stages: 21, 22, 28

Assay Type	Results
Northern blot	7
RT-PCR	16

cDNA source data(56)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(61) Genomic(2) cDNA(56) Primer pair(2) Other(1)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000069045 (Evidence)
Entrez Gene	26900 (Evidence)
UniGene	302938
DFCI	TC1577954, TC1712308
DoTS	DT.40181125, DT.87072802, DT.94234119, DT.97393170
NIA Mouse Gene Index	U138825
EC	3.6.4.13
Consensus CDS Project	CCDS30543.1
International Mouse Knockout Project Status	Ddx3y

Sequences

Length	Strain/Species
genomic	26900	NCBI Gene Model | MGI Sequence Detail	25899	C57BL/6J
transcript	NM_012008	RefSeq | MGI Sequence Detail	4640	C57BL/6
polypeptide	Q62095	UniProt | EBI | MGI Sequence Detail	658	Not Applicable

All sequences(34) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(20 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR011545	DNA/RNA helicase, DEAD/DEAH box type, N-terminal
InterPro	IPR001650	Helicase, C-terminal
InterPro	IPR014001	Helicase, superfamily 1/2, ATP-binding domain
InterPro	IPR000629	RNA helicase, ATP-dependent, DEAD-box, conserved site
InterPro	IPR014014	RNA helicase, DEAD-box type, Q motif
Protein Ontology	PR:000006365	ATP-dependent RNA helicase DDX3Y

Graphical View of Protein Domain Structure

References

(Earliest) J:17429 Gee SL, et al., Mouse erythroid cells express multiple putative RNA helicase genes exhibiting high sequence conservation from yeast to mammals. Gene. 1994 Mar 25;140(2):171-7
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)

Other accession IDs

MGD-MRK-16301, MGI:1924744, MGI:99524