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Homer3 Gene Detail
Summary
  • Symbol
    Homer3
  • Name
    homer scaffolding protein 3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1347359
    NCBI Gene: 26558
  • Gene Overview
    MyGene.info: HOMER3
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:70282891-70294361 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 34.15 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    84 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1347359
protein coding gene Chr8:70282827-70294361 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033698
protein coding gene Chr8:70546018-70557437 (+)
A/J MGP_AJ_G0033681
protein coding gene Chr8:67676426-67688020 (+)
AKR/J MGP_AKRJ_G0033606
protein coding gene Chr8:69603718-69615068 (+)
BALB/cJ MGP_BALBcJ_G0033677
protein coding gene Chr8:67898107-67909454 (+)
C3H/HeJ MGP_C3HHeJ_G0033387
protein coding gene Chr8:70247521-70260135 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034194
protein coding gene Chr8:73216229-73227680 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031138
protein coding gene Chr8:62491407-62503317 (+)
CAST/EiJ MGP_CASTEiJ_G0032712
protein coding gene Chr8:69731668-69743101 (+)
CBA/J MGP_CBAJ_G0033365
protein coding gene Chr8:75837985-75850124 (+)
DBA/2J MGP_DBA2J_G0033519
protein coding gene Chr8:67397642-67409056 (+)
FVB/NJ MGP_FVBNJ_G0033460
protein coding gene Chr8:66503808-66515989 (+)
LP/J MGP_LPJ_G0033606
protein coding gene Chr8:70569949-70583422 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033503
protein coding gene Chr8:78506994-78521633 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034212
protein coding gene Chr8:69788774-69800658 (+)
PWK/PhJ MGP_PWKPhJ_G0032420
protein coding gene Chr8:66690662-66703210 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032256
protein coding gene Chr8:68753394-68767387 (+)
WSB/EiJ MGP_WSBEiJ_G0032827
protein coding gene Chr8:70146200-70158812 (+)



Homology
more
  • Human Ortholog
    HOMER3, homer scaffold protein 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HOMER3, homer scaffold protein 3
    Orthology source: HGNC, HomoloGene
  • Synonyms
    HOMER-3, VESL3
  • Links
    NCBI Gene ID: 9454
    neXtProt AC: NX_Q9NSC5
    UniProt: Q9NSC5

  • Chr Location
    19p13.11; chr19:18929201-18941258 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 37972
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: HOMER3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    14 phenotype references
Homozygous mutants exhibit normal sensitivity to cocaine.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 26558 NCBI Gene Model | MGI Sequence Detail 11471 C57BL/6J ±  kb
transcript NM_001146153 RefSeq | MGI Sequence Detail 2445 C57BL/6  
polypeptide Q99JP6 UniProt | EBI | MGI Sequence Detail 356 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 5
Other
Accession IDs
less
MGI:2142770
References
more
  • Summaries
    All 50
    Developmental Gene Expression 2
    Gene Ontology 12
    Phenotypes 14
  • Earliest
    J:50718 Xiao B, et al., Homer regulates the association of group 1 metabotropic glutamate receptors with multivalent complexes of homer-related, synaptic proteins. Neuron. 1998 Oct;21(4):707-16
  • Latest
    J:230877 Ruegsegger C, et al., Impaired mTORC1-Dependent Expression of Homer-3 Influences SCA1 Pathophysiology. Neuron. 2016 Jan 6;89(1):129-46

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/27/2018
MGI 6.13
The Jackson Laboratory