Slc27a2 MGI Mouse Gene Detail - MGI:1347099 - solute carrier family 27 (fatty acid transporter), member 2

Symbol

Slc27a2
Name

solute carrier family 27 (fatty acid transporter), member 2
Synonyms

ACSVL1, FATP2, FATP2, Vlac, Vlacs, VLCS

Feature Type

protein coding gene
IDs

MGI:1347099
NCBI Gene: 26458
Gene Overview

MyGene.info: SLC27A2
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr2:126553024-126588243 bp, + strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 2, 61.76 cM
Mapping Data

3 experiments

SNPs within 2kb

338 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1347099	protein coding gene	Chr2:126552407-126588243 (.)
129S1/SvImJ	MGP_129S1SvImJ_G0026440	protein coding gene	Chr2:129769807-129811030 (+)
A/J	MGP_AJ_G0026403	protein coding gene	Chr2:124510387-124549574 (+)
AKR/J	MGP_AKRJ_G0026379	protein coding gene	Chr2:128085393-128123035 (+)
BALB/cJ	MGP_BALBcJ_G0026415	protein coding gene	Chr2:124781730-124820053 (+)
C3H/HeJ	MGP_C3HHeJ_G0026159	protein coding gene	Chr2:128563210-128599788 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0026861	protein coding gene	Chr2:133905059-133941968 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0024238	protein coding gene	Chr2:119244402-119280783 (+)
CAST/EiJ	MGP_CASTEiJ_G0025620	protein coding gene	Chr2:128787340-128831132 (+)
CBA/J	MGP_CBAJ_G0026139	protein coding gene	Chr2:138803808-138839645 (+)
DBA/2J	MGP_DBA2J_G0026273	protein coding gene	Chr2:123921636-123959691 (+)
FVB/NJ	MGP_FVBNJ_G0026237	protein coding gene	Chr2:122579548-122617364 (+)
LP/J	MGP_LPJ_G0026378	protein coding gene	Chr2:130031512-130071293 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0026257	protein coding gene	Chr2:142879197-142921315 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0026916	protein coding gene	Chr2:128097173-128134134 (+)
PWK/PhJ	MGP_PWKPhJ_G0025356	protein coding gene	Chr2:123468686-123505056 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0025158	protein coding gene	Chr2:127169511-127210103 (+)
WSB/EiJ	MGP_WSBEiJ_G0025694	protein coding gene	Chr2:128987173-129026620 (+)

Human Ortholog

SLC27A2, solute carrier family 27 member 2

Vertebrate Orthologs

11

Human Ortholog

SLC27A2, solute carrier family 27 member 2
Orthology source: HomoloGene, HGNC
Synonyms

ACSVL1, FACVL1, FATP2, hFACVL1, HsT17226, VLACS, VLCS
Links

HGNC:10996

NCBI Gene ID: 11001

neXtProt AC: NX_O14975

UniProt: O14975
Chr Location

15q21.2; chr15:50182196-50236392 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 37830
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: SLC27A2
Gene Tree

Slc27a2

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Phenotype Summary

2 phenotypes from 1 allele in 1 genetic background
1 phenotype from multigenic genotypes
10 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Chemically induced (other)

1
Gene trapped

1
Radiation induced

1
Targeted

4
Genomic Mutations

2 involving Slc27a2
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

23 strains or lines available

Homozygous mutant mice are viable and show no gross morphological abnormalities.

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All GO Annotations

81
GO References

14

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

357
Tissues

257
cDNA Data

175
Literature Summary

12

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase slc27a2

ZFIN slc27a2a

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Slc27a2 interacts with 50 markers (Mir19a, Mir125a, Mir143, ...) View All

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All Sequences

43
RefSeq

2
UniProt

4
CCDS

CCDS16683.1
UniGene

290044

Ensembl

ENSMUSG00000027359 (Evidence)
NCBI Gene

26458

			Length	Strain/Species	Flank
genomic	26458	NCBI Gene Model \| MGI Sequence Detail	35220	C57BL/6J	± kb
transcript	NM_011978	RefSeq \| MGI Sequence Detail	2309	C57BL/6
polypeptide	O35488	UniProt \| EBI \| MGI Sequence Detail	620	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000015046 very long-chain acyl-CoA synthetase

(term hierarchy)
EC

6.2.1.-, 6.2.1.3
InterPro Domains

IPR020845 AMP-binding, conserved site

IPR025110 AMP-binding enzyme, C-terminal domain

IPR000873 AMP-dependent synthetase/ligase

IPR030305 Fatty acid transport protein 2

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All nucleic 178

cDNA 175

Primer pair 3

Microarray probesets 3

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MGI:1330825

Summaries

All 55

Developmental Gene Expression 12

Gene Ontology 14

Phenotypes 10
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:240758 Duteil D, et al., Lsd1 Ablation Triggers Metabolic Reprogramming of Brown Adipose Tissue. Cell Rep. 2016 Oct 18;17(4):1008-1021

TSS for Slc27a2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19938	Chr2:126552735-126552747 (+)	-283 bp
Tssr19939	Chr2:126552757-126552768 (+)	-261 bp
Tssr19940	Chr2:126552811-126552820 (+)	-208 bp
Tssr19941	Chr2:126552836-126552893 (+)	-159 bp
Tssr19942	Chr2:126552904-126552915 (+)	-114 bp
Tssr19943	Chr2:126553015-126553033 (+)	0 bp
Tssr19944	Chr2:126553580-126553598 (+)	565 bp
Tssr633	Chr2:126556522-126556532 (+)	3,503 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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