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Nubp2 Gene Detail
Summary
  • Symbol
    Nubp2
  • Name
    nucleotide binding protein 2
  • Synonyms
    D17Wsu11e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1347072
    NCBI Gene: 26426
  • Gene Overview
    MyGene.info: NUBP2
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:24882611-24886350 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.53 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    66 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1347072
protein coding gene Chr17:24882611-24886403 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023327
protein coding gene Chr17:23908096-23911823 (-)
A/J MGP_AJ_G0023287
protein coding gene Chr17:23244830-23248575 (-)
AKR/J MGP_AKRJ_G0023254
protein coding gene Chr17:23333384-23337111 (-)
BALB/cJ MGP_BALBcJ_G0023292
protein coding gene Chr17:23445350-23449077 (-)
C3H/HeJ MGP_C3HHeJ_G0023052
protein coding gene Chr17:23697982-23701709 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023735
protein coding gene Chr17:24970921-24974660 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021210
protein coding gene Chr17:20705116-20708795 (-)
CAST/EiJ MGP_CASTEiJ_G0022554
protein coding gene Chr17:23553195-23556945 (-)
CBA/J MGP_CBAJ_G0023028
protein coding gene Chr17:25812272-25815999 (-)
DBA/2J MGP_DBA2J_G0023157
protein coding gene Chr17:22837493-22841238 (-)
FVB/NJ MGP_FVBNJ_G0023127
protein coding gene Chr17:22558046-22561773 (-)
LP/J MGP_LPJ_G0023234
protein coding gene Chr17:24213359-24217086 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023146
protein coding gene Chr17:25504695-25508440 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023773
protein coding gene Chr17:23617834-23621579 (-)
PWK/PhJ MGP_PWKPhJ_G0022303
protein coding gene Chr17:21592874-21596615 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022121
protein coding gene Chr17:21682122-21685851 (-)
WSB/EiJ MGP_WSBEiJ_G0022617
protein coding gene Chr17:23690480-23694215 (-)



Homology
more
  • Human Ortholog
    NUBP2, nucleotide binding protein 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NUBP2, nucleotide binding protein 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CFD1, CIAO6, NBP 2, NUBP1
  • Links
    NCBI Gene ID: 10101
    neXtProt AC: NX_Q9Y5Y2
    UniProt: Q9Y5Y2

  • Chr Location
    16p13.3; chr16:1782923-1789191 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039183 Ensembl Gene Model | MGI Sequence Detail 3740 C57BL/6J ±  kb
transcript ENSMUST00000044252 Ensembl | MGI Sequence Detail 1430 Not Applicable  
polypeptide ENSMUSP00000049319 Ensembl | MGI Sequence Detail 275 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000011477 cytosolic Fe-S cluster assembly factor NUBP2
  • InterPro Domains
    IPR028600 Cytosolic Fe-S cluster assembly factor NUBP2/Cfd1, eukaryotes
    IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35
    IPR000808 Mrp, conserved site
    IPR019591 Mrp/NBP35 ATP-binding protein
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less
  • All nucleic 82
    cDNA 81
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
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MGD-MRK-33980, MGI:106288
References
more
  • Summaries
    All 33
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
  • Latest
    J:191793 Schnatwinkel C, et al., Nubp1 is required for lung branching morphogenesis and distal progenitor cell survival in mice. PLoS One. 2012;7(9):e44871

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory