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Plod2
Gene Detail
 Symbol
Name
ID
Plod2
procollagen lysine, 2-oxoglutarate 5-dioxygenase 2
MGI:1347007
Synonyms D530025C14Rik, LH2, lysyl hydroxylase 2, Plod-2
Feature Type protein coding gene
Genetic Map
Chromosome 9
48.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:92542223-92608428 bp, + strand
From VEGA annotation of GRCm38

  66206 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22681  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: procollagen-lysine 5-dioxygenase
Gene Tree: Plod2

Human
homologs
Human Homolog PLOD2, procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2
NCBI Gene ID 5352
neXtProt AC  NX_O00469
Human Synonyms  LH2, TLH
Human Chr (Location)  3q24; chr3:146069439-146161495 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human PLOD2
Alleles
and
phenotypes
All alleles(5) : Gene trapped(5)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process oxidation-reduction process
Component endoplasmic reticulum, extracellular vesicular exosome, ...
Function dioxygenase activity, iron ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (9 records)
Data Summary: Results (192)    Tissues (122)    Images (34)
Theiler Stages: 10, 18, 21, 22, 23, 25, 28
Assay TypeResults
RNA in situ 178
RT-PCR 14
cDNA source data(77)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(82) cDNA(80) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000031153 (Evidence)
Ensembl Gene ModelENSMUSG00000032374 (Evidence)
Entrez Gene26432 (Evidence)
UniGene79983
DFCITC1576014, TC1696479
DoTSDT.87068890, DT.94175439
EC1.14.11.4
Consensus CDS ProjectCCDS23408.1, CCDS52887.1
International Mouse Knockout Project StatusPlod2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031153 VEGA Gene Model | MGI Sequence Detail 66206 C57BL/6J ±  kb
transcript OTTMUST00000077171 VEGA | MGI Sequence Detail 3663 Not Applicable 
polypeptide OTTMUSP00000040752 VEGA | MGI Sequence Detail 758 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(4) UniProt(3)
Polymorphisms PCR(1) : SNPs within 2kb(907 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR005123 Oxoglutarate/iron-dependent dioxygenase
InterPro IPR001006 Procollagen-lysine 5-dioxygenase
InterPro IPR006620 Prolyl 4-hydroxylase, alpha subunit
Protein Ontology PR:000012877 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2
References (Earliest) J:56595 Ruotsalainen H, et al., Characterization of cDNAs for mouse lysyl hydroxylase 1, 2 and 3, their phylogenetic analysis and tissue-specific expression in the mouse. Matrix Biol. 1999 Jun;18(3):325-9
(Latest) J:189252 Tao G, et al., Collagen XIV is important for growth and structural integrity of the myocardium. J Mol Cell Cardiol. 2012 Nov;53(5):626-38
All references(41)
Other
accession IDs
MGI:1925825

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/15/2014
MGI 5.17
The Jackson Laboratory