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Scamp2 Gene Detail
Summary
  • Symbol
    Scamp2
  • Name
    secretory carrier membrane protein 2
  • Synonyms
    Sc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346518
    NCBI Gene: 24044
  • Gene Overview
    MyGene.info: SCAMP2
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:57560943-57588795 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 31.05 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    82 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346518
protein coding gene Chr9:57560927-57588798 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034870
protein coding gene Chr9:56777241-56808788 (+)
A/J MGP_AJ_G0034851
protein coding gene Chr9:54946671-54975030 (+)
AKR/J MGP_AKRJ_G0034780
protein coding gene Chr9:56207062-56235845 (+)
BALB/cJ MGP_BALBcJ_G0034843
protein coding gene Chr9:54731232-54759967 (+)
C3H/HeJ MGP_C3HHeJ_G0034553
protein coding gene Chr9:56694409-56722861 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035362
protein coding gene Chr9:58360079-58389463 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032273
protein coding gene Chr9:54251049-54277875 (+)
CAST/EiJ MGP_CASTEiJ_G0033874
protein coding gene Chr9:56782197-56811838 (+)
CBA/J MGP_CBAJ_G0034524
protein coding gene Chr9:60396195-60423799 (+)
DBA/2J MGP_DBA2J_G0034683
protein coding gene Chr9:54814157-54842266 (+)
FVB/NJ MGP_FVBNJ_G0034625
protein coding gene Chr9:54042355-54069888 (+)
LP/J MGP_LPJ_G0034766
protein coding gene Chr9:57074735-57102305 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034668
protein coding gene Chr9:61895471-61926548 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035384
protein coding gene Chr9:56230062-56259230 (+)
PWK/PhJ MGP_PWKPhJ_G0033579
protein coding gene Chr9:54843165-54872082 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033413
protein coding gene Chr9:56524312-56553032 (+)
WSB/EiJ MGP_WSBEiJ_G0033987
protein coding gene Chr9:56162941-56194150 (+)



Homology
more
  • Human Ortholog
    SCAMP2, secretory carrier membrane protein 2
  • Vertebrate Orthologs
    11
  • Human Ortholog
    SCAMP2, secretory carrier membrane protein 2
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 10066
    neXtProt AC: NX_O15127
    UniProt: O15127

  • Chr Location
    15q24.1; chr15:74843730-74873379 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4163
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SCAMP2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040188 Ensembl Gene Model | MGI Sequence Detail 27853 C57BL/6J ±  kb
transcript ENSMUST00000045791 Ensembl | MGI Sequence Detail 2340 Not Applicable  
polypeptide ENSMUSP00000038350 Ensembl | MGI Sequence Detail 329 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 18
    cDNA 18

    Microarray probesets 6
Other
Accession IDs
less
MGI:2143165
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:43149 Singleton DR, et al., Three mammalian SCAMPs (secretory carrier membrane proteins) are highly related products of distinct genes having similar subcellular distributions. J Cell Sci. 1997 Sep;110(Pt 17):2099-107
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory