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Scamp3 Gene Detail
Summary
  • Symbol
    Scamp3
  • Name
    secretory carrier membrane protein 3
  • Synonyms
    Sc3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346346
    NCBI Gene: 24045
  • Gene Overview
    MyGene.info: SCAMP3
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:89177473-89182765 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 39.01 cM, cytoband F2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346346
protein coding gene Chr3:89177391-89182770 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027419
protein coding gene Chr3:89375011-89380303 (+)
A/J MGP_AJ_G0027383
protein coding gene Chr3:86415459-86420824 (+)
AKR/J MGP_AKRJ_G0027347
protein coding gene Chr3:88512742-88518034 (+)
BALB/cJ MGP_BALBcJ_G0027392
protein coding gene Chr3:86386311-86391603 (+)
C3H/HeJ MGP_C3HHeJ_G0027134
protein coding gene Chr3:88711976-88717341 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027838
protein coding gene Chr3:92757789-92763081 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025190
protein coding gene Chr3:81903913-81910179 (+)
CAST/EiJ MGP_CASTEiJ_G0026580
protein coding gene Chr3:89057538-89062883 (+)
CBA/J MGP_CBAJ_G0027108
protein coding gene Chr3:95936940-95942305 (+)
DBA/2J MGP_DBA2J_G0027246
protein coding gene Chr3:85801678-85806970 (+)
FVB/NJ MGP_FVBNJ_G0027214
protein coding gene Chr3:84141371-84146663 (+)
LP/J MGP_LPJ_G0027355
protein coding gene Chr3:90456988-90462280 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027234
protein coding gene Chr3:102152173-102157465 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027897
protein coding gene Chr3:88264050-88269415 (+)
PWK/PhJ MGP_PWKPhJ_G0026314
protein coding gene Chr3:85670952-85676589 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026133
protein coding gene Chr3:87430587-87435870 (+)
WSB/EiJ MGP_WSBEiJ_G0026662
protein coding gene Chr3:88653632-88658924 (+)



Homology
more
  • Human Ortholog
    SCAMP3, secretory carrier membrane protein 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SCAMP3, secretory carrier membrane protein 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf3
  • Links
    NCBI Gene ID: 10067
    neXtProt AC: NX_O14828
    UniProt: O14828

  • Chr Location
    1q22; chr1:155255979-155262703 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028049 Ensembl Gene Model | MGI Sequence Detail 5293 C57BL/6J ±  kb
transcript ENSMUST00000120697 Ensembl | MGI Sequence Detail 1475 Not Applicable  
polypeptide ENSMUSP00000112846 Ensembl | MGI Sequence Detail 350 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR007273 SCAMP
Molecular
Reagents
less
  • All nucleic 82
    cDNA 82

    Microarray probesets 3
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 7
    Phenotypes 6
  • Earliest
    J:43149 Singleton DR, et al., Three mammalian SCAMPs (secretory carrier membrane proteins) are highly related products of distinct genes having similar subcellular distributions. J Cell Sci. 1997 Sep;110(Pt 17):2099-107
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory