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Banf1 Gene Detail
Summary
  • Symbol
    Banf1
  • Name
    barrier to autointegration factor 1
  • Synonyms
    Bcrp1, C78287
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346330
    NCBI Gene: 23825
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:5364641-5366645 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 4.31 cM, cytoband A
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    15 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346330
protein coding gene Chr19:5364633-5366876 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024700
protein coding gene Chr19:2322112-2324115 (-)
A/J MGP_AJ_G0024666
protein coding gene Chr19:2197841-2199861 (-)
AKR/J MGP_AKRJ_G0024639
protein coding gene Chr19:2259737-2261735 (-)
BALB/cJ MGP_BALBcJ_G0024666
protein coding gene Chr19:2193957-2195956 (-)
C3H/HeJ MGP_C3HHeJ_G0024434
protein coding gene Chr19:2265484-2267488 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025113
protein coding gene Chr19:2381883-2383881 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022543
protein coding gene Chr19:2104329-2106168 (-)
CAST/EiJ MGP_CASTEiJ_G0023906
protein coding gene Chr19:2293345-2295348 (-)
CBA/J MGP_CBAJ_G0024406
protein coding gene Chr19:2483509-2485517 (-)
DBA/2J MGP_DBA2J_G0024533
protein coding gene Chr19:2176970-2178970 (-)
FVB/NJ MGP_FVBNJ_G0024500
protein coding gene Chr19:2185207-2187233 (-)
LP/J MGP_LPJ_G0024619
protein coding gene Chr19:2305237-2307242 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024530
protein coding gene Chr19:2339541-2341336 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025161
protein coding gene Chr19:2260819-2262817 (-)
PWK/PhJ MGP_PWKPhJ_G0023652
protein coding gene Chr19:2215368-2217428 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023457
protein coding gene Chr19:2250768-2252985 (-)
WSB/EiJ MGP_WSBEiJ_G0023968
protein coding gene Chr19:2278139-2280144 (-)



Homology
more
  • Human Ortholog
    BANF1, barrier to autointegration factor 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    BANF1, barrier to autointegration factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BAF, BCRP1, D14S1460, NGPS
  • Links
    NCBI Gene ID: 8815
    neXtProt AC: NX_O75531
    UniProt: O75531

  • Chr Location
    11q13.1; chr11:66002079-66004149 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024844 Ensembl Gene Model | MGI Sequence Detail 2005 C57BL/6J ±  kb
transcript ENSMUST00000025762 Ensembl | MGI Sequence Detail 735 Not Applicable  
polypeptide ENSMUSP00000025762 Ensembl | MGI Sequence Detail 89 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 106
    cDNA 106

    Microarray probesets 5
Other
Accession IDs
less
MGI:2147785
References
more
  • Summaries
    All 38
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:57554 Lee MS, et al., A previously unidentified host protein protects retroviral DNA from autointegration. Proc Natl Acad Sci U S A. 1998 Feb 17;95(4):1528-33
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory