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Banf1
Gene Detail
Symbol

Name
ID
Banf1
barrier to autointegration factor 1
MGI:1346330
Synonyms
Bcrp1, C78287
Feature Type
protein coding gene
Genetic Map
Chromosome 19
4.31 cM, cytoband A
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:5364641-5366645 bp, - strand
From Ensembl annotation of GRCm38

  2005 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2866  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: BANF1
Protein SuperFamily: barrier-to-autointegration factor
Gene Tree: Banf1

Human
homologs
BANF1, barrier to autointegration factor 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 8815
neXtProt AC: NX_O75531

Human Synonyms: BAF, BCRP1, D14S1460, NGPS

Human Chr (Location): 11q13.1; chr11:66002079-66004146 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human BANF1

Mutations,
alleles, and
phenotypes
All mutations/alleles(76) : Gene trapped(72) Targeted(4)
Incidental mutations (data from APF , CvDC )
Interactions
Banf1 interacts with 53 markers (Mir15a, Mir29a, Mir29b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process DNA integration, establishment of integrated proviral latency
Component chromosome, cytoplasm, ...
Function DNA binding
External Resources: FuncBase
Expression
cDNA source data(104)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase banf1    NEW 
Molecular
reagents
All nucleic(105) cDNA(105)
Microarray probesets(5)
Other database
links
Ensembl Gene Model ENSMUSG00000024844 (Evidence)
Entrez Gene 23825 (Evidence)
UniGene 358649
DFCI TC1574691, TC1716105
NIA Mouse Gene Index U019054
Consensus CDS Project CCDS29458.1
International Mouse Phenotyping Consortium Status Banf1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024844 Ensembl Gene Model | MGI Sequence Detail 2005 C57BL/6J ±  kb
transcript ENSMUST00000025762 Ensembl | MGI Sequence Detail 735 Not Applicable 
polypeptide ENSMUSP00000025762 Ensembl | MGI Sequence Detail 89 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(9) UniProt(1)
Polymorphisms
SNPs within 2kb(15 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004122 Barrier- to-autointegration factor, BAF
Protein Ontology PR:000004637 barrier-to-autointegration factor
References
(Earliest) J:57554 Lee MS, et al., A previously unidentified host protein protects retroviral DNA from autointegration. Proc Natl Acad Sci U S A. 1998 Feb 17;95(4):1528-33
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(36)
Other
accession IDs
MGI:2147785

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory