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Banf1
Gene Detail
 Symbol
Name
ID
Banf1
barrier to autointegration factor 1
MGI:1346330
Synonyms Bcrp1, C78287
Feature Type protein coding gene
Genetic Map
Chromosome 19
4.31 cM, cytoband A
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:5364641-5366645 bp, - strand
From Ensembl annotation of GRCm38

  2005 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:2866  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: barrier-to-autointegration factor
Gene Tree: Banf1

Human
homologs
Human Homolog BANF1, barrier to autointegration factor 1
NCBI Gene ID 8815
neXtProt AC  NX_O75531
Human Synonyms  BAF, BCRP1, D14S1460, NGPS
Human Chr (Location)  11q13.1; chr11:66002079-66004146 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human BANF1
Mutations,
alleles, and
phenotypes
All mutations/alleles(76) : Gene trapped(72) Targeted(4)
Incidental mutations (data from APF )
Interactions
Banf1 interacts with 53 markers (Mir15a, Mir29a, Mir29b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process DNA integration, establishment of integrated proviral latency
Component chromosome, cytoplasm, ...
Function DNA binding
External Resources: FuncBase
Expression
cDNA source data(104)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(105) cDNA(105)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000024844 (Evidence)
Entrez Gene23825 (Evidence)
UniGene358649
DFCITC1574691, TC1716105
NIA Mouse Gene IndexU019054
Consensus CDS ProjectCCDS29458.1
International Mouse Knockout Project StatusBanf1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024844 Ensembl Gene Model | MGI Sequence Detail 2005 C57BL/6J ±  kb
transcript ENSMUST00000025762 Ensembl | MGI Sequence Detail 735 Not Applicable 
polypeptide ENSMUSP00000025762 Ensembl | MGI Sequence Detail 89 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(7) UniProt(1)
Polymorphisms SNPs within 2kb(15 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004122 Barrier- to-autointegration factor, BAF
Protein Ontology PR:000004637 barrier-to-autointegration factor
References (Earliest) J:57554 Lee MS, et al., A previously unidentified host protein protects retroviral DNA from autointegration. Proc Natl Acad Sci U S A. 1998 Feb 17;95(4):1528-33
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGI:2147785

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory