Banf1
Gene Detail

Symbol Name ID

Banf1 barrier to autointegration factor 1 MGI:1346330

Synonyms

Bcrp1, C78287

Feature Type

protein coding gene

Genetic Map

Chromosome 19

4.31 cM, cytoband A
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr19:5364641-5366645 bp, - strand From Ensembl annotation of GRCm38   2005 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:2866  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 zebrafish

Protein SuperFamily: barrier-to-autointegration factor
Gene Tree: Banf1

Human homologs

Human Homolog		BANF1, barrier to autointegration factor 1
NCBI Gene ID		8815
neXtProt AC		NX_O75531
Human Synonyms		BAF, BCRP1, D14S1460, NGPS
Human Chr (Location)		11q13.1; chr11:65769550-65771617 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human BANF1

Alleles and phenotypes

All alleles(75) : Targeted(3) Gene trapped(72)

Gene Ontology (GO) classifications

All GO classifications: (7 annotations)

Process	DNA integration, establishment of integrated proviral latency
Component	chromosome, cytoplasm, ...
Function	DNA binding

External Resources: FuncBase

Expression

cDNA source data(104)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(105) cDNA(105)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000024844 (Evidence)
Entrez Gene	23825 (Evidence)
UniGene	358649
DFCI	TC1574691
NIA Mouse Gene Index	U019054
Consensus CDS Project	CCDS29458.1
International Mouse Knockout Project Status	Banf1

Sequences

Length	Strain/Species
genomic	ENSMUSG00000024844	Ensembl Gene Model | MGI Sequence Detail	2005	C57BL/6J
transcript	ENSMUST00000025762	Ensembl | MGI Sequence Detail	735	Not Applicable
polypeptide	ENSMUSP00000025762	Ensembl | MGI Sequence Detail	89	Not Applicable

All sequences(28) RefSeq(4) UniProt(1)

Polymorphisms

SNPs(10 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR004122	Barrier- to-autointegration factor, BAF
Protein Ontology	PR:000004637	barrier-to-autointegration factor

References

(Earliest) J:57554 Lee MS, et al., A previously unidentified host protein protects retroviral DNA from autointegration. Proc Natl Acad Sci U S A. 1998 Feb 17;95(4):1528-33
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)

Other accession IDs

MGI:2147785