Nr2e3
Gene Detail

Symbol Name ID

Nr2e3 nuclear receptor subfamily 2, group E, member 3 MGI:1346317

Synonyms

photoreceptor-specific nuclear receptor, Pnr, RNR

Feature Type

protein coding gene

Genetic Map

Chromosome 9

32.35 cM
Detailed Genetic Map ± 1 cM


Mapping data(8)

Sequence Map

Chr9:59942771-59960659 bp, - strand From VEGA annotation of GRCm38   17889 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:84397  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 chicken; 1 zebrafish

Protein SuperFamily: retinoic X receptor-like nuclear receptor
Gene Tree: Nr2e3

Human homologs

Human Homolog		NR2E3, nuclear receptor subfamily 2, group E, member 3
NCBI Gene ID		10002
neXtProt AC		NX_Q9Y5X4
Human Synonyms		ESCS, PNR, rd7, RNR, RP37
Human Chr (Location)		15q22.32; chr15:72102894-72110600 (+)  GRCh37.p10
Disease Associations		(2) Diseases Associated with Human NR2E3

Alleles and phenotypes

All alleles(2) : Targeted(1) Spontaneous(1)
 

Mice homozygous for a null mutation exhibit rossettes and a reduced number of nuclei in the retinal outer nuclear layer.

 
Human Diseases Modeled Using Mouse Nr2e3 (1)    Alleles Annotated to Human Diseases(1)    Phenotype Images(2)

Gene Ontology (GO) classifications

All GO classifications: (22 annotations)

Process	eye photoreceptor cell development, intracellular receptor signaling pathway, ...
Component	nucleus, transcription factor complex
Function	DNA binding, ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity, ...

External Resources: FuncBase

Expression

Literature Summary: (22 records)
Data Summary: Results (182)    Tissues (163)    Images (36)
Theiler Stages: 2, 3, 4, 5, 16, 17, 20, 21, 22, 23, 24, 26, 28

Assay Type	Results
Immunohistochemistry	1
RNA in situ	156
Western blot	3
RT-PCR	22

cDNA source data(50)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(53) cDNA(51) Primer pair(2)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000023008 (Evidence)
Ensembl Gene Model	ENSMUSG00000032292 (Evidence)
Entrez Gene	23958 (Evidence)
UniGene	103641
DFCI	TC1581983, TC1601332, TC1612808, TC1622013, TC1632168
DoTS	DT.101302896, DT.101349738, DT.101731660, DT.87056518, DT.91318774, DT.97411780
NIA Mouse Gene Index	U030954
Consensus CDS Project	CCDS23255.1
International Mouse Knockout Project Status	Nr2e3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000023008	VEGA Gene Model | MGI Sequence Detail	17889	C57BL/6J
transcript	OTTMUST00000055414	VEGA | MGI Sequence Detail	2037	Not Applicable
polypeptide	OTTMUSP00000026535	VEGA | MGI Sequence Detail	395	Not Applicable

All sequences(50) RefSeq(2) UniProt(2)

Polymorphisms

RFLP(2) : SNPs(141 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR008946	Nuclear hormone receptor, ligand-binding
InterPro	IPR000536	Nuclear hormone receptor, ligand-binding, core
InterPro	IPR001723	Steroid hormone receptor
InterPro	IPR003068	Transcription factor COUP
InterPro	IPR013088	Zinc finger, NHR/GATA-type
InterPro	IPR001628	Zinc finger, nuclear hormone receptor-type
Protein Ontology	PR:000011403	photoreceptor-specific nuclear receptor

References

(Earliest) J:55816 Chang B, et al., A new mouse model of retinal dysplasia and degeneration (rd7). Invest Ophthalmol Vis Sci. 1998;39(4):S880 (Abstr.)
(Latest) J:177494 Peng GH, et al., Active opsin loci adopt intrachromosomal loops that depend on the photoreceptor transcription factor network. Proc Natl Acad Sci U S A. 2011 Oct 25;108(43):17821-6
All references(67)

Other accession IDs

MGI:1354383, MGI:2444464