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Sh3yl1 Gene Detail
Summary
  • Symbol
    Sh3yl1
  • Name
    Sh3 domain YSC-like 1
  • Synonyms
    Ray, YSC84
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346118
    NCBI Gene: 24057
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:30911669-30960160 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 13.01 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    197 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346118
protein coding gene Chr12:30911668-30960162 (.)
129S1/SvImJ MGP_129S1SvImJ_G0019655
protein coding gene Chr12:28834060-28887078 (+)
A/J MGP_AJ_G0019622
protein coding gene Chr12:28024657-28074883 (+)
AKR/J MGP_AKRJ_G0019593
protein coding gene Chr12:28927658-28977830 (+)
BALB/cJ MGP_BALBcJ_G0019599
protein coding gene Chr12:28270039-28317794 (+)
C3H/HeJ MGP_C3HHeJ_G0019403
protein coding gene Chr12:28793563-28845250 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020046
protein coding gene Chr12:29727024-29779582 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017671
protein coding gene Chr12:27345381-27389627 (+)
CAST/EiJ MGP_CASTEiJ_G0018958
protein coding gene Chr12:23791597-23851017 (+)
CBA/J MGP_CBAJ_G0019374
protein coding gene Chr12:30701804-30760225 (+)
DBA/2J MGP_DBA2J_G0019488
protein coding gene Chr12:27865399-27914956 (+)
FVB/NJ MGP_FVBNJ_G0019479
protein coding gene Chr12:27659191-27709083 (+)
LP/J MGP_LPJ_G0019558
protein coding gene Chr12:28932600-28982340 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019514
protein coding gene Chr12:30325907-30384734 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020086
protein coding gene Chr12:28447663-28498299 (+)
PWK/PhJ MGP_PWKPhJ_G0018725
protein coding gene Chr12:22598435-22654350 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018513
protein coding gene Chr12:23068768-23118927 (+)
WSB/EiJ MGP_WSBEiJ_G0019008
protein coding gene Chr12:28688231-28738820 (+)



Homology
more
  • Human Ortholog
    SH3YL1, SH3 and SYLF domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SH3YL1, SH3 and SYLF domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RAY
  • Links
    NCBI Gene ID: 26751
    neXtProt AC: NX_Q96HL8
    UniProt: Q96HL8

  • Chr Location
    2p25.3; chr2:218136-264866 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 31662
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SH3YL1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 24057 NCBI Gene Model | MGI Sequence Detail 48492 C57BL/6J ±  kb
transcript NR_110343 RefSeq | MGI Sequence Detail 1892 C57BL/6  
polypeptide O08641 UniProt | EBI | MGI Sequence Detail 340 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 43
    cDNA 43

    Microarray probesets 3
Other
Accession IDs
less
MGI:2144784
References
more
  • Summaries
    All 25
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:62054 Aoki N, et al., A novel mouse gene, Sh3yl1, is expressed in the anagen hair follicle. J Invest Dermatol. 2000 May;114(5):1050-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory