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Rpp40 Gene Detail
Summary
  • Symbol
    Rpp40
  • Name
    ribonuclease P 40 subunit
  • Synonyms
    D8Bwg1265e, Rnasep1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346084
    NCBI Gene: 208366
  • Gene Overview
    MyGene.info: RPP40
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:35893472-35906359 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 14.44 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    287 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346084
protein coding gene Chr13:35893472-35911565 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020459
protein coding gene Chr13:34082107-34094978 (-)
A/J MGP_AJ_G0020413
protein coding gene Chr13:33062429-33075304 (-)
AKR/J MGP_AKRJ_G0020391
protein coding gene Chr13:33875551-33888434 (-)
BALB/cJ MGP_BALBcJ_G0020409
protein coding gene Chr13:33126001-33138879 (-)
C3H/HeJ MGP_C3HHeJ_G0020208
protein coding gene Chr13:33745688-33758581 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020842
protein coding gene Chr13:35233669-35248542 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018429
protein coding gene Chr13:31284485-31298373 (-)
CAST/EiJ MGP_CASTEiJ_G0019723
protein coding gene Chr13:33460650-33473456 (-)
CBA/J MGP_CBAJ_G0020169
protein coding gene Chr13:36740297-36753188 (-)
DBA/2J MGP_DBA2J_G0020291
protein coding gene Chr13:32584779-32598000 (-)
FVB/NJ MGP_FVBNJ_G0020270
protein coding gene Chr13:32125878-32138751 (-)
LP/J MGP_LPJ_G0020366
protein coding gene Chr13:34321739-34334621 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020300
protein coding gene Chr13:36900390-36913261 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020885
protein coding gene Chr13:33479013-33491890 (-)
PWK/PhJ MGP_PWKPhJ_G0019478
protein coding gene Chr13:32698274-32711399 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019309
protein coding gene Chr13:32189683-32202635 (-)
WSB/EiJ MGP_WSBEiJ_G0019785
protein coding gene Chr13:33838896-33851775 (-)



Homology
more
  • Human Ortholog
    RPP40, ribonuclease P/MRP subunit p40
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPP40, ribonuclease P/MRP subunit p40
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA428J1.3, RNASEP1
  • Links
    NCBI Gene ID: 10799
    neXtProt AC: NX_O75818
    UniProt: O75818

  • Chr Location
    6p25.1; chr6:4992405-5004063 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 4836
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RPP40
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021418 Ensembl Gene Model | MGI Sequence Detail 12888 C57BL/6J ±  kb
transcript ENSMUST00000171686 Ensembl | MGI Sequence Detail 4380 Not Applicable  
polypeptide ENSMUSP00000130290 Ensembl | MGI Sequence Detail 363 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 17
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-34123, MGI:106429
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory