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Cdh20 Gene Detail
Summary
  • Symbol
    Cdh20
  • Name
    cadherin 20
  • Synonyms
    Cdh7
  • Feature Type
    protein coding gene
  • IDs
    MGI:1346069
    NCBI Gene: 23836
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:104768819-104995481 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 49.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1861 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1346069
protein coding gene Chr1:104768529-104995481 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016364
protein coding gene Chr1:106857221-107095226 (+)
A/J MGP_AJ_G0016348
protein coding gene Chr1:103138988-103366448 (+)
AKR/J MGP_AKRJ_G0016308
protein coding gene Chr1:105931268-106172678 (+)
BALB/cJ MGP_BALBcJ_G0016304
protein coding gene Chr1:103234935-103461165 (+)
C3H/HeJ MGP_C3HHeJ_G0016131
protein coding gene Chr1:106382011-106611900 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016763
protein coding gene Chr1:111011494-111244471 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014481
protein coding gene Chr1:97542285-97761250 (+)
CAST/EiJ MGP_CASTEiJ_G0015713
protein coding gene Chr1:105310245-105548540 (+)
CBA/J MGP_CBAJ_G0016104
protein coding gene Chr1:114714301-114962261 (+)
DBA/2J MGP_DBA2J_G0016209
protein coding gene Chr1:102184385-102412406 (+)
FVB/NJ MGP_FVBNJ_G0016210
protein coding gene Chr1:101166960-101388397 (+)
LP/J MGP_LPJ_G0016283
protein coding gene Chr1:108122586-108348867 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016236
protein coding gene Chr1:119200122-119443427 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016802
protein coding gene Chr1:106033462-106265201 (+)
PWK/PhJ MGP_PWKPhJ_G0015500
protein coding gene Chr1:101261132-101497820 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015285
protein coding gene Chr1:104715068-104945011 (+)
WSB/EiJ MGP_WSBEiJ_G0015776
protein coding gene Chr1:105868570-106101210 (+)



Homology
more
  • Human Ortholog
    CDH20, cadherin 20
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CDH20, cadherin 20
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Cdh7, CDH7L3
  • Links
    NCBI Gene ID: 28316
    neXtProt AC: NX_Q9HBT6
    UniProt: Q9HBT6

  • Chr Location
    18q21.33; chr18:61333582-61555773 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 23836 NCBI Gene Model | MGI Sequence Detail 226663 C57BL/6J ±  kb
transcript NM_011800 RefSeq | MGI Sequence Detail 4021 C57BL/6  
polypeptide Q9Z0M3 UniProt | EBI | MGI Sequence Detail 801 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 12
    Primer pair 2
    Other 1

    Microarray probesets 2
References
more
  • Summaries
    All 31
    Developmental Gene Expression 10
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:253351 Hanley O, et al., Parallel Pbx-Dependent Pathways Govern the Coalescence and Fate of Motor Columns. Neuron. 2016 Sep 7;91(5):1005-1020

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/01/2019
MGI 6.14
The Jackson Laboratory