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Slc25a1
Gene Detail
Symbol

Name
ID
Slc25a1
solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
MGI:1345283
Synonyms
1300019P08Rik, 2610100G11Rik, Dgsj, Slc20a3
Feature Type
protein coding gene
Genetic Map
Chromosome 16
11.11 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(11)
Sequence Map
Chr16:17925211-17928219 bp, - strand
From VEGA annotation of GRCm38

  3009 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4362  Vertebrate Homology Class
1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Slc25a1

Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(3) Targeted(10)
Genomic Mutations involving Slc25a1 (7)
Incidental mutations (data from Mutagenetix , APF )
Alleles Annotated to Human Diseases(2)   
Interactions
Slc25a1 interacts with 104 markers (Mir1a-1, Mir1a-2, Mir10a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process transmembrane transport, transport
Component integral component of membrane, membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (106)    Tissues (44)    Images (27)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 73
RT-PCR 33
cDNA source data(127)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(152) Genomic(21) cDNA(128) Primer pair(3)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000026786 (Evidence)
Ensembl Gene ModelENSMUSG00000003528 (Evidence)
Entrez Gene13358 (Evidence)
UniGene229291
DFCITC1574069
DoTSDT.94124693, DT.101219382, DT.94162218
NIA Mouse Gene IndexU036853, U141910
Consensus CDS ProjectCCDS28014.1
International Mouse Knockout Project StatusSlc25a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026786 VEGA Gene Model | MGI Sequence Detail 3009 C57BL/6J ±  kb
transcript OTTMUST00000066236 VEGA | MGI Sequence Detail 1678 Not Applicable 
polypeptide OTTMUSP00000033168 VEGA | MGI Sequence Detail 311 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(3 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR023395 Mitochondrial carrier domain
InterPro IPR002067 Mitochondrial carrier protein
InterPro IPR018108 Mitochondrial substrate/solute carrier
Protein Ontology PR:000015004 tricarboxylate transport protein, mitochondrial
References
(Earliest) J:38193 Galili N, et al., A region of mouse chromosome 16 is syntenic to the DiGeorge, velocardiofacial syndrome minimal critical region. (Correction: vol. 7(4):399). Genome Res. 1997 Jan;7(1):17-26
(Latest) J:213451 Karpinski BA, et al., Dysphagia and disrupted cranial nerve development in a mouse model of DiGeorge (22q11) deletion syndrome. Dis Model Mech. 2014 Feb;7(2):245-57
All references(52)
Other
accession IDs
MGI:1203504, MGI:1915693, MGI:1924027, MGI:2146385, MGI:892007

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory