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Slc30a1
Gene Detail
 Symbol
Name
ID
Slc30a1
solute carrier family 30 (zinc transporter), member 1
MGI:1345281
Synonyms C130040I11Rik, Znt1
Feature Type protein coding gene
Genetic Map
Chromosome 1
97.01 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr1:191906767-191913247 bp, + strand
From VEGA annotation of GRCm38

  6481 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:6681  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: cation efflux protein
Gene Tree: Slc30a1

Human
homologs
Human Homolog SLC30A1, solute carrier family 30 (zinc transporter), member 1
NCBI Gene ID 7779
neXtProt AC  NX_Q9Y6M5
Human Synonyms  ZNT1, ZRC1
Human Chr (Location)  1q32.3; chr1:211575039-211578757 (-)  GRCh38
Alleles
and
phenotypes
All alleles(3) : Targeted(2) Gene trapped(1)
 
Homozygous mutation of this gene results in embryonic lethality soon after implantation with embryonic growth arrest at the egg cylinder stage. Embryos from heterozygous females on a zinc deficient diet develop abnormally.
 
Phenotype Images(1)
Gene Ontology
(GO)
classifications
All GO classifications: (32 annotations)
Process cadmium ion transmembrane transport, calcium ion import, ...
Component cytoplasm, endoplasmic reticulum, ...
Function calcium channel inhibitor activity, cation transmembrane transporter activity, ...
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (204)    Tissues (103)    Images (24)
Theiler Stages: 19, 21, 22, 23, 28
Assay TypeResults
RNA in situ 197
Northern blot 7
cDNA source data(36)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(39) Genomic(1) cDNA(36) Primer pair(1) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000021865 (Evidence)
Ensembl Gene ModelENSMUSG00000037434 (Evidence)
Entrez Gene22782 (Evidence)
UniGene9024
DFCITC1586153, TC1605661
DoTSDT.485067
NIA Mouse Gene IndexU001296
Consensus CDS ProjectCCDS15625.1
International Mouse Knockout Project StatusSlc30a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021865 VEGA Gene Model | MGI Sequence Detail 6481 C57BL/6J ±  kb
transcript OTTMUST00000051885 VEGA | MGI Sequence Detail 5244 Not Applicable 
polypeptide OTTMUSP00000024495 VEGA | MGI Sequence Detail 503 Not Applicable 

For the selected sequences
All sequences(29) RefSeq(4) UniProt(3)
Polymorphisms RFLP(1) : SNPs within 2kb(65 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002524 Cation efflux protein
InterPro IPR027469 Cation efflux protein transmembrane domain
Protein Ontology PR:000015073 zinc transporter 1
References (Earliest) J:23612 Palmiter RD, et al., Cloning and functional characterization of a mammalian zinc transporter that confers resistance to zinc. EMBO J. 1995 Feb 15;14(4):639-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(45)
Other
accession IDs
MGD-MRK-24139, MGI:103261, MGI:2138330

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory