About   Help   FAQ
Psmd13 Gene Detail
Summary
  • Symbol
    Psmd13
  • Name
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
  • Synonyms
    26S proteasome subunit p40.5, S11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1345192
    NCBI Gene: 23997
  • Gene Overview
    MyGene.info: PSMD13
Location & Maps
more
  • Sequence Map
    Chr7:140881968-140898643 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      16676 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 86.09 cM, cytoband F5
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PSMD13, proteasome 26S subunit, non-ATPase 13
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PSMD13, proteasome 26S subunit, non-ATPase 13
    Orthology source: HGNC, HomoloGene
  • Synonyms
    HSPC027, p40.5, Rpn9, S11
  • Links
    NCBI Gene ID: 5719
    neXtProt AC: NX_Q9UNM6

  • Chr Location
    11p15.5; chr11:236808-252984 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    12
  • Gene trapped
    7
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    1 involving Psmd13
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023443 VEGA Gene Model | MGI Sequence Detail 16676 C57BL/6J ±  kb
transcript OTTMUST00000056983 VEGA | MGI Sequence Detail 1989 Not Applicable  
polypeptide OTTMUSP00000027446 VEGA | MGI Sequence Detail 376 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    108 from dbSNP Build 142
Protein
Information
less
  • UniProt
    7 Sequences
  • Protein Ontology
    PR:000002179 26S proteasome non-ATPase regulatory subunit 13
  • InterPro Domains
    IPR000717 Proteasome component (PCI) domain
    IPR011991 Winged helix-turn-helix DNA-binding domain
Molecular
Reagents
less
  • All nucleic 177
    cDNA 177

    Microarray probesets 3
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:54629 Hoffman L, et al., Identification, molecular cloning, and characterization of subunit 11 of the human 26S proteasome. FEBS Lett. 1999 Apr 16;449(1):88-92
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/17/2016
MGI 6.05
The Jackson Laboratory