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Psmd13 Gene Detail
Summary
  • Symbol
    Psmd13
  • Name
    proteasome (prosome, macropain) 26S subunit, non-ATPase, 13
  • Synonyms
    26S proteasome subunit p40.5, S11
  • Feature Type
    protein coding gene
  • IDs
    MGI:1345192
    NCBI Gene: 23997
  • Gene Overview
    MyGene.info: PSMD13
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:140882394-140898642 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 86.09 cM, cytoband F5
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    101 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1345192
protein coding gene Chr7:140881968-140898643 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033198
protein coding gene Chr7:146019136-146035868 (+)
A/J MGP_AJ_G0033180
protein coding gene Chr7:141866055-141882544 (+)
AKR/J MGP_AKRJ_G0033112
protein coding gene Chr7:145752077-145773277 (+)
BALB/cJ MGP_BALBcJ_G0033181
protein coding gene Chr7:141593792-141610409 (+)
C3H/HeJ MGP_C3HHeJ_G0032895
protein coding gene Chr7:145511934-145530242 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033692
protein coding gene Chr7:151356431-151381644 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030665
protein coding gene Chr7:143076376-143090985 (+)
CAST/EiJ MGP_CASTEiJ_G0032225
protein coding gene Chr7:137810992-137827994 (+)
CBA/J MGP_CBAJ_G0032867
protein coding gene Chr7:156486673-156508446 (+)
DBA/2J MGP_DBA2J_G0033020
protein coding gene Chr7:139804075-139820003 (+)
FVB/NJ MGP_FVBNJ_G0032972
protein coding gene Chr7:139714778-139733032 (+)
LP/J MGP_LPJ_G0033114
protein coding gene Chr7:147518944-147537825 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033005
protein coding gene Chr7:157154143-157172668 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033712
protein coding gene Chr7:144739717-144757437 (+)
PWK/PhJ MGP_PWKPhJ_G0031930
protein coding gene Chr7:133072971-133092072 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031776
protein coding gene Chr7:131558302-131573514 (+)
WSB/EiJ MGP_WSBEiJ_G0032336
protein coding gene Chr7:145658414-145677512 (+)



Homology
more
  • Human Ortholog
    PSMD13, proteasome 26S subunit, non-ATPase 13
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PSMD13, proteasome 26S subunit, non-ATPase 13
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSPC027, p40.5, Rpn9, S11
  • Links
    NCBI Gene ID: 5719
    neXtProt AC: NX_Q9UNM6
    UniProt: Q9UNM6

  • Chr Location
    11p15.5; chr11:236675-252984 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 23997 NCBI Gene Model | MGI Sequence Detail 16249 C57BL/6J ±  kb
transcript NM_011875 RefSeq | MGI Sequence Detail 1563 C57BL/6  
polypeptide Q9WVJ2 UniProt | EBI | MGI Sequence Detail 376 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    7 Sequences
  • Protein Ontology
    PR:000002179 26S proteasome non-ATPase regulatory subunit 13
  • InterPro Domains
    IPR035298 26S Proteasome non-ATPase regulatory subunit 13
    IPR000717 Proteasome component (PCI) domain
    IPR036390 Winged helix DNA-binding domain superfamily
Molecular
Reagents
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  • All nucleic 178
    cDNA 178

    Microarray probesets 3
References
more
  • Summaries
    All 38
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:54629 Hoffman L, et al., Identification, molecular cloning, and characterization of subunit 11 of the human 26S proteasome. FEBS Lett. 1999 Apr 16;449(1):88-92
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory