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Rai2 Gene Detail
Summary
  • Symbol
    Rai2
  • Name
    retinoic acid induced 2
  • Synonyms
    3f8
  • Feature Type
    protein coding gene
  • IDs
    MGI:1344378
    NCBI Gene: 24004
  • Gene Overview
    MyGene.info: RAI2
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:161717069-161779496 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 74.07 cM, cytoband F4
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    205 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1344378
 protein coding gene ChrX:161717036-161779496 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036237
 protein coding gene ChrX:159677240-159742749 (+)
A/J MGP_AJ_G0036207
 protein coding gene ChrX:158928157-158991174 (+)
AKR/J MGP_AKRJ_G0036135
 protein coding gene ChrX:163996747-164059006 (+)
BALB/cJ MGP_BALBcJ_G0036200
 protein coding gene ChrX:156954043-157015418 (+)
C3H/HeJ MGP_C3HHeJ_G0035906
 protein coding gene ChrX:160068163-160133930 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036722
 protein coding gene ChrX:164426723-164493051 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033544
 protein coding gene ChrX:150079874-150143838 (+)
CAST/EiJ MGP_CASTEiJ_G0035195
 protein coding gene ChrX:139074308-139138302 (+)
CBA/J MGP_CBAJ_G0035881
 protein coding gene ChrX:169115917-169190296 (+)
DBA/2J MGP_DBA2J_G0036047
 protein coding gene ChrX:157863702-157925460 (+)
FVB/NJ MGP_FVBNJ_G0035978
 protein coding gene ChrX:156990093-157051089 (+)
LP/J MGP_LPJ_G0036132
 protein coding gene ChrX:160881591-160943810 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0036010
 protein coding gene ChrX:177824107-177892249 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036763
 protein coding gene ChrX:159202372-159265575 (+)
PWK/PhJ MGP_PWKPhJ_G0034893
 protein coding gene ChrX:135910255-135973462 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034714
 protein coding gene ChrX:139507225-139570287 (+)
WSB/EiJ MGP_WSBEiJ_G0035330
 protein coding gene ChrX:157193939-157257683 (+)



Homology
more
  • Human Ortholog
    RAI2, retinoic acid induced 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RAI2, retinoic acid induced 2
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 10742
    neXtProt AC: NX_Q9Y5P3
    UniProt: Q9Y5P3

  • Chr Location
    Xp22.13; chrX:17800049-17861346 (-)  GRCh38.p7
  • HomoloGene
    Vertebrate Homology Class 11034
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RAI2
  • Gene Tree
    Rai2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    2 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    642
  • Tissues
    10
  • cDNA Data
    9
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000043518 Ensembl Gene Model | MGI Sequence Detail 62428 C57BL/6J ±  kb
    transcript ENSMUST00000061514 Ensembl | MGI Sequence Detail 2204 Not Applicable  
    polypeptide ENSMUSP00000051618 Ensembl | MGI Sequence Detail 529 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000013694 retinoic acid-induced protein 2
      (term hierarchy)
    • InterPro Domains
      IPR026092 Retinoic acid-induced protein 2/sine oculis-binding protein homologue
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 9
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 24
      Developmental Gene Expression 3
      Phenotypes 2
    • Earliest
      J:16740 Jonk LJ, et al., Isolation and developmental expression of retinoic-acid-induced genes. Dev Biol. 1994 Feb;161(2):604-14
    • Latest
      J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    02/16/2021
    MGI 6.16     		The Jackson Laboratory