Ubl3 Gene Detail

Summary

• Symbol
  Ubl3
• Name
  ubiquitin-like 3

• Feature Type
  protein coding gene
• IDs
  MGI:1344373
  NCBI Gene: 24109
• Gene Overview
  MyGene.info: UBL3
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr5:148504635-148552789 bp, - strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    48155 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 88.66 cM, cytoband G2-3
• Mapping Data
  3 experiments

Homology

• Human Ortholog
  UBL3, ubiquitin like 3

• Vertebrate Orthologs
  10

• Human Ortholog
  UBL3, ubiquitin like 3
  Orthology source: HomoloGene, HGNC
• Synonyms
  HCG-1, PNSC1
• Links
  HGNC:12504

  NCBI Gene ID: 5412

  neXtProt AC: NX_O95164

  UniProt: O95164

  
  
• Chr Location
  13q12.3; chr13:29764408-29850683 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 5153
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: UBL3
• Protein SuperFamily
  membrane-anchored ubiquitin-fold protein, HCG-1 type
• Gene Tree
  Ubl3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  149
• Gene trapped
  147
• Targeted
  2
• Find Mice (IMSR)
  70 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  2

• External Resources
  FuncBase

Expression

• cDNA Data
  12

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase ubl3
  ZFIN ubl3b

Interactions

• Ubl3 interacts with 260 markers (Mir1a-1, Mir1a-2, Mir7b, ...) View All

Sequences &
Gene Models

• All Sequences
  62
• RefSeq
  12
• UniProt
  3
• CCDS
  CCDS39403.1

• VEGA
  OTTMUSG00000055806 (Evidence)
• Ensembl
  ENSMUSG00000001687 (Evidence)
• NCBI Gene
  24109

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000055806	VEGA Gene Model | MGI Sequence Detail	48155	C57BL/6J
transcript	OTTMUST00000138113	VEGA | MGI Sequence Detail	2537	Not Applicable
polypeptide	OTTMUSP00000072653	VEGA | MGI Sequence Detail	117	Not Applicable

Polymorphisms

• SNPs within 2kb
  491 from dbSNP Build 142

Protein
Information

• UniProt
  3 Sequences
• Protein Ontology
  PR:000016997 ubiquitin-like protein 3
  (term hierarchy)
• PDB
  1WGH
• InterPro Domains
  IPR017000 Membrane-anchored ubiquitin-fold protein
  IPR000626 Ubiquitin domain
  IPR029071 Ubiquitin-like domain superfamily

Molecular
Reagents

• All nucleic 13

  Genomic 1

  cDNA 12

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2141152

References

• Summaries
  All 30

  Gene Ontology 2

  Phenotypes 8
• Earliest
  J:56252 Chadwick BP, et al., Cloning, mapping and expression of UBL3, a novel ubiquitin-like gene. Gene. 1999 Jun 11;233(1-2):189-95
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42