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Cdh18 Gene Detail
Summary
  • Symbol
    Cdh18
  • Name
    cadherin 18
  • Synonyms
    B230220E17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1344366
    NCBI Gene: 320865
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:22549022-23474418 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 8.54 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6198 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1344366
protein coding gene Chr15:22548897-23474432 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021746
protein coding gene Chr15:20406401-21369301 (+)
A/J MGP_AJ_G0021706
protein coding gene Chr15:19593573-20515246 (+)
AKR/J MGP_AKRJ_G0021684
protein coding gene Chr15:20062965-21004754 (+)
BALB/cJ MGP_BALBcJ_G0021713
protein coding gene Chr15:19627822-20547490 (+)
C3H/HeJ MGP_C3HHeJ_G0021489
protein coding gene Chr15:20081027-21018432 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022152
protein coding gene Chr15:21230795-22283830 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019692
protein coding gene Chr15:18211869-19079178 (+)
CAST/EiJ MGP_CASTEiJ_G0021005
protein coding gene Chr15:20402704-21376446 (+)
CBA/J MGP_CBAJ_G0021458
protein coding gene Chr15:21932570-22983625 (+)
DBA/2J MGP_DBA2J_G0021582
protein coding gene Chr15:19421776-20330395 (+)
FVB/NJ MGP_FVBNJ_G0021560
protein coding gene Chr15:19026989-19939813 (+)
LP/J MGP_LPJ_G0021650
protein coding gene Chr15:20255498-21207651 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021585
protein coding gene Chr15:24172088-25513385 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022175
protein coding gene Chr15:20256213-21204908 (+)
PWK/PhJ MGP_PWKPhJ_G0020748
protein coding gene Chr15:19579708-20499635 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020586
protein coding gene Chr15:20025729-20978378 (+)
WSB/EiJ MGP_WSBEiJ_G0021061
protein coding gene Chr15:20267052-21218076 (+)



Homology
more
  • Human Ortholog
    CDH18, cadherin 18
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CDH18, cadherin 18
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDH14, CDH14L, CDH24
  • Links
    NCBI Gene ID: 1016
    neXtProt AC: NX_Q13634
    UniProt: Q13634

  • Chr Location
    5p14.3; chr5:19472930-20575902 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 55858
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDH18
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from multigenic genotypes
    15 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000040420 Ensembl Gene Model | MGI Sequence Detail 925397 C57BL/6J ±  kb
transcript ENSMUST00000164787 Ensembl | MGI Sequence Detail 2744 Not Applicable  
polypeptide ENSMUSP00000130851 Ensembl | MGI Sequence Detail 790 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2444914, MGI:3057183
References
more
  • Summaries
    All 39
    Developmental Gene Expression 5
    Gene Ontology 2
    Phenotypes 15
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:253473 Goodwin LO, et al., Large-scale discovery of mouse transgenic integration sites reveals frequent structural variation and insertional mutagenesis. bioRxiv. 2017 Dec 18;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory