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Ccr9
Gene Detail
Symbol

Name
ID
Ccr9
chemokine (C-C motif) receptor 9
MGI:1341902
Synonyms
Cmkbr10, GPR-9-6
Feature Type
protein coding gene
Genetic Map
Chromosome 9
74.33 cM, cytoband F
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:123678439-123781971 bp, + strand
From VEGA annotation of GRCm38

  103533 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22546  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 3 zebrafish

HCOP human homology predictions: CCR9
Protein SuperFamily: chemokine receptor
Gene Tree: Ccr9

Human
homologs
CCR9, chemokine (C-C motif) receptor 9
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 10803
neXtProt AC: NX_P51686

Human Synonyms: CC-CKR-9, CDw199, GPR28, GPR-9-6

Human Chr (Location): 3p21.3; chr3:45886504-45903177 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous null mice have altered trafficing of lymphocytes to the intestine.
 
Interactions
Ccr9 interacts with 359 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process chemokine-mediated signaling pathway, chemotaxis, ...
Component cell surface, integral component of membrane, ...
Function C-C chemokine receptor activity, chemokine receptor activity, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (110)    Tissues (61)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 90
Northern blot 17
RT-PCR 3
cDNA source data(23)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(26) Genomic(1) cDNA(24) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000036110 (Evidence)
Ensembl Gene Model ENSMUSG00000029530 (Evidence)
Entrez Gene 12769 (Evidence)
UniGene 440604
DFCI TC1582304
DoTS DT.101362018, DT.50316281, DT.94225236
NIA Mouse Gene Index U011200
Consensus CDS Project CCDS23662.1
International Mouse Phenotyping Consortium Status Ccr9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036110 VEGA Gene Model | MGI Sequence Detail 103533 C57BL/6J ±  kb
transcript OTTMUST00000092805 VEGA | MGI Sequence Detail 2830 Not Applicable 
polypeptide OTTMUSP00000051361 VEGA | MGI Sequence Detail 369 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(1202 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004069 CC chemokine receptor 9
InterPro IPR000355 Chemokine receptor family
InterPro IPR017452 GPCR, rhodopsin-like, 7TM
InterPro IPR000276 G protein-coupled receptor, rhodopsin-like
Protein Ontology PR:000001205 C-C chemokine receptor type 9
References
(Earliest) J:54920 Zaballos A, et al., Cutting edge: identification of the orphan chemokine receptor GPR-9-6 as CCR9, the receptor for the chemokine TECK. J Immunol. 1999 May 15;162(10):5671-5
(Latest) J:214377 Zhang SL, et al., Chemokine treatment rescues profound T-lineage progenitor homing defect after bone marrow transplant conditioning in mice. Blood. 2014 Jul 10;124(2):296-304
All references(66)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory