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Ccr9
Gene Detail
 Symbol
Name
ID
Ccr9
chemokine (C-C motif) receptor 9
MGI:1341902
Synonyms Cmkbr10, GPR-9-6
Feature Type protein coding gene
Genetic Map
Chromosome 9
74.33 cM, cytoband F
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:123678439-123781971 bp, + strand
From VEGA annotation of GRCm38

  103533 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:22546  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 3 zebrafish

Protein SuperFamily: chemokine receptor
Gene Tree: Ccr9

Human
homologs
Human Homolog CCR9, chemokine (C-C motif) receptor 9
NCBI Gene ID 10803
neXtProt AC  NX_P51686
Human Synonyms  CC-CKR-9, CDw199, GPR28, GPR-9-6
Human Chr (Location)  3p21.3; chr3:45886504-45903175 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous null mice have altered trafficing of lymphocytes to the intestine.
 
Interactions
Ccr9 interacts with 360 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process chemokine-mediated signaling pathway, chemotaxis, ...
Component integral component of membrane, membrane, ...
Function C-C chemokine receptor activity, chemokine receptor activity, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (110)    Tissues (61)    Images (23)
Theiler Stages: 15, 17, 19, 20, 21, 23, 26, 28
Assay TypeResults
RNA in situ 90
Northern blot 17
RT-PCR 3
cDNA source data(23)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(26) Genomic(1) cDNA(24) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000036110 (Evidence)
Ensembl Gene ModelENSMUSG00000029530 (Evidence)
Entrez Gene12769 (Evidence)
UniGene440604
DFCITC1582304
DoTSDT.101362018, DT.50316281, DT.94225236
NIA Mouse Gene IndexU011200
Consensus CDS ProjectCCDS23662.1
International Mouse Knockout Project StatusCcr9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036110 VEGA Gene Model | MGI Sequence Detail 103533 C57BL/6J ±  kb
transcript OTTMUST00000092807 VEGA | MGI Sequence Detail 2888 Not Applicable 
polypeptide OTTMUSP00000051363 VEGA | MGI Sequence Detail 369 Not Applicable 

For the selected sequences
All sequences(45) RefSeq(4) UniProt(2)
Polymorphisms SNPs within 2kb(1202 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004069 CC chemokine receptor 9
InterPro IPR000355 Chemokine receptor family
InterPro IPR017452 GPCR, rhodopsin-like, 7TM
InterPro IPR000276 G protein-coupled receptor, rhodopsin-like
Protein Ontology PR:000001205 C-C chemokine receptor type 9
References (Earliest) J:54920 Zaballos A, et al., Cutting edge: identification of the orphan chemokine receptor GPR-9-6 as CCR9, the receptor for the chemokine TECK. J Immunol. 1999 May 15;162(10):5671-5
(Latest) J:193141 De Obaldia ME, et al., Early T-cell progenitors are the major granulocyte precursors in the adult mouse thymus. Blood. 2013 Jan 3;121(1):64-71
All references(65)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory