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Trank1 Gene Detail
Summary
  • Symbol
    Trank1
  • Name
    tetratricopeptide repeat and ankyrin repeat containing 1
  • Synonyms
    A230061D21Rik, C030048J01Rik, Lba1, LOC235639
  • Feature Type
    protein coding gene
  • IDs
    MGI:1341834
    NCBI Gene: 320429
  • Gene Overview
    MyGene.info: TRANK1
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:111311739-111395775 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 60.95 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    615 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1341834
protein coding gene Chr9:111311600-111395775 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035373
protein coding gene Chr9:113546655-113632605 (+)
A/J MGP_AJ_G0035354
protein coding gene Chr9:109388141-109470758 (+)
AKR/J MGP_AKRJ_G0035285
protein coding gene Chr9:112117613-112202537 (+)
BALB/cJ MGP_BALBcJ_G0035349
protein coding gene Chr9:109138059-109220953 (+)
C3H/HeJ MGP_C3HHeJ_G0035057
protein coding gene Chr9:112619809-112705532 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035871
protein coding gene Chr9:116656480-116742134 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032757
protein coding gene Chr9:106588398-106672535 (+)
CAST/EiJ MGP_CASTEiJ_G0034363
protein coding gene Chr9:112419704-112519704 (+)
CBA/J MGP_CBAJ_G0035024
protein coding gene Chr9:120965123-121058571 (+)
DBA/2J MGP_DBA2J_G0035183
protein coding gene Chr9:108836114-108918407 (+)
FVB/NJ MGP_FVBNJ_G0035130
protein coding gene Chr9:107676025-107757503 (+)
LP/J MGP_LPJ_G0035262
protein coding gene Chr9:113818572-113906361 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035170
protein coding gene Chr9:122258951-122357708 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035891
protein coding gene Chr9:112468758-112555824 (+)
PWK/PhJ MGP_PWKPhJ_G0034070
protein coding gene Chr9:109091188-109175530 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033905
protein coding gene Chr9:112561510-112653944 (+)
WSB/EiJ MGP_WSBEiJ_G0034484
protein coding gene Chr9:112327568-112411793 (+)



Homology
more
  • Human Ortholog
    TRANK1, tetratricopeptide repeat and ankyrin repeat containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRANK1, tetratricopeptide repeat and ankyrin repeat containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LBA1
  • Links
    NCBI Gene ID: 9881
    neXtProt AC: NX_O15050
    UniProt: O15050

  • Chr Location
    3p22.2; chr3:36826817-36945662 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000062296 Ensembl Gene Model | MGI Sequence Detail 84037 C57BL/6J ±  kb
transcript ENSMUST00000078626 Ensembl | MGI Sequence Detail 10520 Not Applicable  
polypeptide ENSMUSP00000077697 Ensembl | MGI Sequence Detail 2999 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 55
    cDNA 55

    Microarray probesets 2
Other
Accession IDs
less
MGI:1924728, MGI:2444004, MGI:2685033
References
more
  • Summaries
    All 24
    Developmental Gene Expression 3
    Phenotypes 2
  • Earliest
    J:48894 Moore PM, et al., Identification and cloning of a brain autoantigen in neuro-behavioral SLE. J Neuroimmunol. 1998 Mar 1;82(2):116-25
  • Latest
    J:222626 McClelland KS, et al., Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells. Biol Reprod. 2015 Jun;92(6):145

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory