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Trank1 Gene Detail
Summary
  • Symbol
    Trank1
  • Name
    tetratricopeptide repeat and ankyrin repeat containing 1
  • Synonyms
    A230061D21Rik, C030048J01Rik, Lba1, LOC235639
  • Feature Type
    protein coding gene
  • IDs
    MGI:1341834
    NCBI Gene: 320429
  • Gene Overview
    MyGene.info: TRANK1
Location & Maps
more
  • Sequence Map
    Chr9:111311739-111395775 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      84037 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 60.95 cM, cytoband F2
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    TRANK1, tetratricopeptide repeat and ankyrin repeat containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRANK1, tetratricopeptide repeat and ankyrin repeat containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LBA1
  • Links
    NCBI Gene ID: 9881
    neXtProt AC: NX_O15050

  • Chr Location
    3p22.2; chr3:36826817-36990981 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000052507 VEGA Gene Model | MGI Sequence Detail 84037 C57BL/6J ±  kb
transcript OTTMUST00000131680 VEGA | MGI Sequence Detail 10520 Not Applicable  
polypeptide OTTMUSP00000070361 VEGA | MGI Sequence Detail 2999 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    615 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 54
    cDNA 54

    Microarray probesets 2
Other
Accession IDs
less
MGI:1924728, MGI:2444004, MGI:2685033
References
more
  • Summaries
    All 23
    Developmental Gene Expression 3
    Phenotypes 1
  • Earliest
    J:48894 Moore PM, et al., Identification and cloning of a brain autoantigen in neuro-behavioral SLE. J Neuroimmunol. 1998 Mar 1;82(2):116-25
  • Latest
    J:222626 McClelland KS, et al., Purification and Transcriptomic Analysis of Mouse Fetal Leydig Cells Reveals Candidate Genes for Specification of Gonadal Steroidogenic Cells. Biol Reprod. 2015 Jun;92(6):145

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory