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Tpbg
Gene Detail
 Symbol
Name
ID
Tpbg
trophoblast glycoprotein
MGI:1341264
Synonyms 5T4, 5T4 oncofetal antigen
Feature Type protein coding gene
Genetic Map
Chromosome 9
46.40 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr9:85842380-85847055 bp, + strand
From NCBI annotation of GRCm38

  4676 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4859  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Tpbg

Human
homologs
Human Homolog TPBG, trophoblast glycoprotein
NCBI Gene ID 7162
neXtProt AC  NX_Q13641
Human Synonyms  5T4, 5T4AG, M6P1
Human Chr (Location)  6q14-q15; chr6:82363206-82367417 (+)  GRCh38
Alleles
and
phenotypes
All alleles(5) : Targeted(4) Gene trapped(1)
 
Mice homozygous for a knock-out allele exhibit low penetrance hydrocephaly and premature death. Embryonic stem cells isolated from these mice exhibit impaired mesenchyme differentiation and reduced chemotaxis following differentiation.
 
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component cytoplasm, endoplasmic reticulum, ...
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (162)    Tissues (72)    Images (62)
Theiler Stages: 1, 2, 3, 4, 5, 6, 8, 11, 13, 20, 21, 22, 23, 24, 28
Assay TypeResults
Immunohistochemistry 67
RNA in situ 95
cDNA source data(10)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000035274 (Evidence)
Entrez Gene21983 (Evidence)
DFCITC1582703, TC1591161, TC1600798
DoTSDT.101247277, DT.40178785
NIA Mouse Gene IndexU010821
Consensus CDS ProjectCCDS23380.1
International Mouse Knockout Project StatusTpbg
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 21983 NCBI Gene Model | MGI Sequence Detail 4676 C57BL/6J ±  kb
transcript NM_011627 RefSeq | MGI Sequence Detail 3618 C57BL/6 
polypeptide Q9Z0L0 UniProt | EBI | MGI Sequence Detail 426 Not Applicable 

For the selected sequences
All sequences(32) RefSeq(6) UniProt(2)
Polymorphisms SNPs within 2kb(56 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000483 Cysteine-rich flanking region, C-terminal
InterPro IPR001611 Leucine-rich repeat
InterPro IPR000372 Leucine-rich repeat-containing N-terminal
InterPro IPR003591 Leucine-rich repeat, typical subtype
Protein Ontology PR:000016569 trophoblast glycoprotein
Graphical View of Protein Domain Structure
References (Earliest) J:55628 King KW, et al., Organisation of the mouse and human 5T4 oncofoetal leucine-rich glycoprotein genes and expression in foetal and adult murine tissues. Biochim Biophys Acta. 1999 Jun 9;1445(3):257-70
(Latest) J:203028 Hasenpusch-Theil K, et al., Transcriptional analysis of Gli3 mutants identifies Wnt target genes in the developing hippocampus. Cereb Cortex. 2012 Dec;22(12):2878-93
All references(35)
Other
accession IDs
MGI:2143309

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory