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Chil4
Gene Detail
 Symbol
Name
ID
Chil4
chitinase-like 4
MGI:1341098
Synonyms Chi3l4, Ym2
Feature Type protein coding gene
Genetic Map
Chromosome 3
46.49 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr3:106201490-106219507 bp, - strand
From VEGA annotation of GRCm38

  18018 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:74931  Vertebrate Homology Class
2 mouse; 1 rat

Protein SuperFamily: chitinase-like protein
Gene Tree: Chil4

Alleles
and
phenotypes
All alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process carbohydrate metabolic process, chitin catabolic process, ...
Component cytoplasm, extracellular region
Function chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds
External Resources: FuncBase
Expression
cDNA source data(5)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(6) Genomic(1) cDNA(5)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000016670 (Evidence)
Ensembl Gene ModelENSMUSG00000063779 (Evidence)
Entrez Gene104183 (Evidence)
UniGene425140
DFCITC1599156, TC1609138, TC1612465
DoTSDT.101372589, DT.101708262, DT.101717474
NIA Mouse Gene IndexU344275
Consensus CDS ProjectCCDS17719.1
International Mouse Knockout Project StatusChil4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016670 VEGA Gene Model | MGI Sequence Detail 18018 C57BL/6J ±  kb
transcript OTTMUST00000040348 VEGA | MGI Sequence Detail 1539 Not Applicable 
polypeptide OTTMUSP00000018028 VEGA | MGI Sequence Detail 402 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(76 from dbSNP Build 137)    SNPs within 2kb including multiple locations(86)
Protein-related
information
ResourceIDDescription
InterPro IPR011583 Chitinase II
InterPro IPR013781 Glycoside hydrolase, catalytic domain
InterPro IPR001223 Glycoside hydrolase, family 18, catalytic domain
InterPro IPR017853 Glycoside hydrolase, superfamily
Protein Ontology PR:000006180 chitinase-3-like protein 4
References (Earliest) J:51389 Jin HM, et al., Genetic characterization of the murine Ym1 gene and identification of a cluster of highly homologous genes. Genomics. 1998 Dec 1;54(2):316-22
(Latest) J:202092 Hussain M, et al., New paralogues and revised time line in the expansion of the vertebrate GH18 family. J Mol Evol. 2013 Apr;76(4):240-60
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory