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Pex16 Gene Detail
Summary
  • Symbol
    Pex16
  • Name
    peroxisomal biogenesis factor 16
  • Synonyms
    peroxisome biogenesis factor 16
  • Feature Type
    protein coding gene
  • IDs
    MGI:1338829
    NCBI Gene: 18633
  • Gene Overview
    MyGene.info: PEX16
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:92374676-92381217 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 50.98 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    62 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1338829
protein coding gene Chr2:92374676-92381220 (.)
129S1/SvImJ MGP_129S1SvImJ_G0026165
protein coding gene Chr2:93805340-93811881 (+)
A/J MGP_AJ_G0026126
protein coding gene Chr2:90008304-90014846 (+)
AKR/J MGP_AKRJ_G0026107
protein coding gene Chr2:92497584-92504123 (+)
BALB/cJ MGP_BALBcJ_G0026135
protein coding gene Chr2:90192675-90199216 (+)
C3H/HeJ MGP_C3HHeJ_G0025886
protein coding gene Chr2:92803522-92810061 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026586
protein coding gene Chr2:97020622-97027163 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023977
protein coding gene Chr2:86500622-86507106 (+)
CAST/EiJ MGP_CASTEiJ_G0025351
protein coding gene Chr2:93349690-93356231 (+)
CBA/J MGP_CBAJ_G0025864
protein coding gene Chr2:100406605-100413146 (+)
DBA/2J MGP_DBA2J_G0026000
protein coding gene Chr2:89601367-89607908 (+)
FVB/NJ MGP_FVBNJ_G0025963
protein coding gene Chr2:88712175-88718714 (+)
LP/J MGP_LPJ_G0026104
protein coding gene Chr2:94001403-94007944 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025989
protein coding gene Chr2:103365054-103371595 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026640
protein coding gene Chr2:92581138-92587679 (+)
PWK/PhJ MGP_PWKPhJ_G0025086
protein coding gene Chr2:89346990-89353531 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024887
protein coding gene Chr2:92151323-92157816 (+)
WSB/EiJ MGP_WSBEiJ_G0025418
protein coding gene Chr2:93199185-93205727 (+)



Homology
more
  • Human Ortholog
    PEX16, peroxisomal biogenesis factor 16
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PEX16, peroxisomal biogenesis factor 16
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PBD8A, PBD8B
  • Links
    NCBI Gene ID: 9409
    neXtProt AC: NX_Q9Y5Y5
    UniProt: Q9Y5Y5

  • Chr Location
    11p11.2; chr11:45909669-45918123 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 3537
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PEX16
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000027222 Ensembl Gene Model | MGI Sequence Detail 6542 C57BL/6J ±  kb
transcript ENSMUST00000028650 Ensembl | MGI Sequence Detail 1392 Not Applicable  
polypeptide ENSMUSP00000028650 Ensembl | MGI Sequence Detail 336 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 5
References
more
  • Summaries
    All 37
    Developmental Gene Expression 1
    Gene Ontology 7
    Phenotypes 10
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:265666 Fratta P, et al., Mice with endogenous TDP-43 mutations exhibit gain of splicing function and characteristics of amyotrophic lateral sclerosis. EMBO J. 2018 Jun 1;37(11)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory