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S100a11
Gene Detail
 Symbol
Name
ID
S100a11
S100 calcium binding protein A11 (calgizzarin)
MGI:1338798
Synonyms cal, calgizzarin, Emap1, S100a14, S100c
Feature Type protein coding gene
Genetic Map
Chromosome 3
40.51 cM, cytoband E-F
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr3:93520488-93526287 bp, + strand
From VEGA annotation of GRCm38

  5800 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:137318  Vertebrate Homology Class
1 mouse; 1 rat

Protein SuperFamily: S-100 protein
Gene Tree: S100a11

Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(12) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mice dwith disruptions in this gene display no obvious phenotype abnormalities other than reduced sperm counts in males.
 
Interactions
S100a11 interacts with 15 markers (Mir24-1, Mir24-2, Mir129-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process regulation of cell proliferation
Component cytoplasm, nucleus
Function calcium-dependent protein binding, calcium ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (41)    Tissues (19)    Images (12)
Theiler Stages: 11, 13, 20, 21, 22, 23, 24, 28
Assay TypeResults
RNA in situ 7
Northern blot 24
RT-PCR 10
cDNA source data(14)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(16) Genomic(1) cDNA(14) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000022126 (Evidence)
Ensembl Gene ModelENSMUSG00000027907 (Evidence)
Entrez Gene20195 (Evidence)
DFCITC1586698, TC1736567
DoTSDT.103578298
Consensus CDS ProjectCCDS38525.1
International Mouse Knockout Project StatusS100a11
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022126 VEGA Gene Model | MGI Sequence Detail 5800 C57BL/6J ±  kb
transcript OTTMUST00000052513 VEGA | MGI Sequence Detail 511 Not Applicable 
polypeptide OTTMUSP00000024913 VEGA | MGI Sequence Detail 98 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(74 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018247 EF-Hand 1, calcium-binding site
InterPro IPR002048 EF-hand domain
InterPro IPR011992 EF-hand-like domain
InterPro IPR013787 S100/CaBP-9k-type, calcium binding, subdomain
InterPro IPR001751 S100/Calbindin-D9k, conserved site
Protein Ontology PR:000014404 protein S100-A11
References (Earliest) J:20657 Kao J, et al., Characterization of a novel tumor-derived cytokine. Endothelial-monocyte activating polypeptide II. J Biol Chem. 1994 Oct 7;269(40):25106-19
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(44)
Other
accession IDs
MGD-MRK-19682, MGI:102775, MGI:1353430

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory