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Sec22b
Gene Detail
 Symbol
Name
ID
Sec22b
SEC22 vesicle trafficking protein homolog B (S. cerevisiae)
MGI:1338759
Synonyms 4930564D15Rik, ERS-24, Sec22l1
Feature Type protein coding gene
Genetic Map
Chromosome 3
42.35 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:97901190-97923276 bp, + strand
From VEGA annotation of GRCm38

  22087 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3597  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Gene Tree: Sec22b

Human
homologs
Human Homolog SEC22B, SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)
NCBI Gene ID 9554
neXtProt AC  NX_O75396
Human Synonyms  ERS-24, SEC22L1
Human Chr (Location)  1q21.1; chr1:120155942-120176521 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sec22b interacts with 267 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process ER to Golgi vesicle-mediated transport, protein transport, ...
Component cell, endoplasmic reticulum, ...
Function SNAP receptor activity, SNARE binding, ...
External Resources: FuncBase
Expression
cDNA source data(17)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(18) cDNA(18)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000028867 (Evidence)
Ensembl Gene ModelENSMUSG00000027879 (Evidence)
Entrez Gene20333 (Evidence)
DFCITC1576907, TC1644889, TC1676016
DoTSDT.111059069, DT.488199, DT.488422, DT.91339855
NIA Mouse Gene IndexU003619, U359432
PDB1IFQ
Consensus CDS ProjectCCDS17658.1
International Mouse Knockout Project StatusSec22b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028867 VEGA Gene Model | MGI Sequence Detail 22087 C57BL/6J ±  kb
transcript OTTMUST00000071496 VEGA | MGI Sequence Detail 2810 Not Applicable 
polypeptide OTTMUSP00000036640 VEGA | MGI Sequence Detail 215 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(2) UniProt(4)
Polymorphisms SNPs within 2kb(151 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010908 Longin domain
InterPro IPR011012 Longin-like domain
InterPro IPR001388 Synaptobrevin
Protein Ontology PR:000014584 vesicle-trafficking protein SEC22b
References (Earliest) J:46012 Hay JC, et al., Protein interactions regulating vesicle transport between the endoplasmic reticulum and Golgi apparatus in mammalian cells. Cell. 1997 Apr 4;89(1):149-58
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(40)
Other
accession IDs
MGI:1922615, MGI:2139737, MGI:2140084, MGI:3035211

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory