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Trim10 Gene Detail
Summary
  • Symbol
    Trim10
  • Name
    tripartite motif-containing 10
  • Synonyms
    Herf1, Rnf9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1338757
    NCBI Gene: 19824
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:36869574-36877833 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 19.16 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1338757
protein coding gene Chr17:36869496-36877833 (+)
129S1/SvImJ MGP_129S1SvImJ_G0023684
protein coding gene Chr17:37219310-37228762 (+)
A/J MGP_AJ_G0023642
protein coding gene Chr17:36049345-36057617 (+)
AKR/J MGP_AKRJ_G0023613
protein coding gene Chr17:36483438-36491677 (+)
BALB/cJ MGP_BALBcJ_G0023649
protein coding gene Chr17:36289987-36298242 (+)
C3H/HeJ MGP_C3HHeJ_G0023411
protein coding gene Chr17:36997224-37005463 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024087
protein coding gene Chr17:38818271-38826512 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021555
protein coding gene Chr17:33861955-33872526 (+)
CAST/EiJ MGP_CASTEiJ_G0022896
protein coding gene Chr17:37125435-37133680 (+)
CBA/J MGP_CBAJ_G0023388
protein coding gene Chr17:40333321-40341560 (+)
DBA/2J MGP_DBA2J_G0023513
protein coding gene Chr17:35441278-35449525 (+)
FVB/NJ MGP_FVBNJ_G0023486
protein coding gene Chr17:35050556-35058800 (+)
LP/J MGP_LPJ_G0023591
protein coding gene Chr17:37752899-37761141 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023509
protein coding gene Chr17:39129434-39138584 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024132
protein coding gene Chr17:36821316-36830633 (+)
PWK/PhJ MGP_PWKPhJ_G0022648
protein coding gene Chr17:34218468-34226701 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022467
protein coding gene Chr17:34903276-34912800 (+)
WSB/EiJ MGP_WSBEiJ_G0022963
protein coding gene Chr17:37136580-37144849 (+)



Homology
more
  • Human Ortholog
    TRIM10, tripartite motif containing 10
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TRIM10, tripartite motif containing 10
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HERF1, RFB30, RNF9
  • Links
    NCBI Gene ID: 10107
    neXtProt AC: NX_Q9UDY6
    UniProt: Q9UDY6

  • Chr Location
    6p22.1; chr6:30151939-30163216 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073400 Ensembl Gene Model | MGI Sequence Detail 8260 C57BL/6J ±  kb
transcript ENSMUST00000060524 Ensembl | MGI Sequence Detail 2245 Not Applicable  
polypeptide ENSMUSP00000057928 Ensembl | MGI Sequence Detail 489 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
Other
Accession IDs
less
MGI:2146826, MGI:2147109
References
more
  • Summaries
    All 30
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 1
  • Earliest
    J:54633 Harada H, et al., HERF1, a novel hematopoiesis-specific RING finger protein, is required for terminal differentiation of erythroid cells. Mol Cell Biol. 1999 May;19(5):3808-15
  • Latest
    J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory