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Capn7
Gene Detail
Symbol

Name
ID
Capn7
calpain 7
MGI:1338030
Synonyms
PalBH
Feature Type
protein coding gene
Genetic Map
Chromosome 14
19.10 cM, cytoband B
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr14:31336638-31371986 bp, + strand
From VEGA annotation of GRCm38

  35349 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7651  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Capn7

Human
homologs
Human Homolog CAPN7, calpain 7
NCBI Gene ID 23473
neXtProt AC  NX_Q9Y6W3
Human Synonyms  CALPAIN7, PALBH
Human Chr (Location)  3p24; chr3:15206226-15252916 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(5) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruptions in this gene frequently die before weaning. Survivors display reduced body weight.
 
Interactions
Capn7 interacts with 373 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (165)    Tissues (110)    Images (47)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 34
In situ reporter (knock in) 93
RT-PCR 38
cDNA source data(84)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(85) cDNA(84) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000027910 (Evidence)
Ensembl Gene ModelENSMUSG00000021893 (Evidence)
Entrez Gene12339 (Evidence)
UniGene201535
DFCITC1575049
DoTSDT.97347864, DT.491452, DT.101239720
NIA Mouse Gene IndexU043389
EC3.4.22.-
Consensus CDS ProjectCCDS26911.1
International Mouse Knockout Project StatusCapn7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027910 VEGA Gene Model | MGI Sequence Detail 35349 C57BL/6J ±  kb
transcript OTTMUST00000069127 VEGA | MGI Sequence Detail 3648 Not Applicable 
polypeptide OTTMUSP00000035062 VEGA | MGI Sequence Detail 813 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(435 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007330 MIT
InterPro IPR001300 Peptidase C2, calpain, catalytic domain
InterPro IPR022683 Peptidase C2, calpain, domain III
InterPro IPR022684 Peptidase C2, calpain family
InterPro IPR022682 Peptidase C2, calpain, large subunit, domain III
Protein Ontology PR:000005019 calpain-7
References
(Earliest) J:53883 Franz T, et al., Capn7: a highly divergent vertebrate calpain with a novel C-terminal domain. Mamm Genome. 1999 Mar;10(3):318-21
(Latest) J:157819 Shimogori T, et al., A genomic atlas of mouse hypothalamic development. Nat Neurosci. 2010;13(6):767-75
All references(35)
Other
accession IDs
MGI:2145742

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory