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Tom1 Gene Detail
Summary
  • Symbol
    Tom1
  • Name
    target of myb1 trafficking protein
  • Feature Type
    protein coding gene
  • IDs
    MGI:1338026
    NCBI Gene: 21968
  • Gene Overview
    MyGene.info: TOM1
Location & Maps
more
  • Sequence Map
    Chr8:75033686-75070121 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      36436 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 35.57 cM
  • Mapping Data
    5 experiments
Homology
more
  • Human Ortholog
    TOM1, target of myb1 membrane trafficking protein
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TOM1, target of myb1 membrane trafficking protein
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 10043
    neXtProt AC: NX_O60784

  • Chr Location
    22q13.1; chr22:35299275-35347994 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    2
  • Genomic Mutations
    1 involving Tom1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 21968 NCBI Gene Model | MGI Sequence Detail 36436 C57BL/6J ±  kb
transcript NM_001136259 RefSeq | MGI Sequence Detail 2358 Not Specified  
polypeptide O88746 UniProt | EBI | MGI Sequence Detail 492 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    221 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    Genomic 2
    cDNA 14
    Other 1

    Microarray probesets 5
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:54916 Seroussi E, et al., TOM1 genes map to human chromosome 22q13.1 and mouse chromosome 8C1 and encode proteins similar to the endosomal proteins HGS and STAM. Genomics. 1999 May 1;57(3):380-8
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory