Opn3
Gene Detail

Symbol Name ID

Opn3 opsin 3 MGI:1338022

Synonyms

Ecpn, encephalopsin, ERO, panopsin

Feature Type

protein coding gene

Genetic Map

Chromosome 1

81.66 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr1:175662421-175692776 bp, - strand From VEGA annotation of GRCm38   30356 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:40707  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 chicken; 1 zebrafish

Protein SuperFamily: animal opsin
Gene Tree: Opn3

Human homologs

Human Homolog		OPN3, opsin 3
NCBI Gene ID		23596
neXtProt AC		NX_Q9H1Y3
Human Synonyms		ECPN
Human Chr (Location)		1q43; chr1:241756452-241803701 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(3) : Targeted(3)

Gene Ontology (GO) classifications

All GO classifications: (14 annotations)

Process	G-protein coupled receptor signaling pathway, phototransduction, ...
Component	integral to membrane, membrane
Function	G-protein coupled receptor activity, photoreceptor activity, ...

External Resources: FuncBase

Expression

Literature Summary: (5 records)
Data Summary: Results (23)    Tissues (7)    Images (8)
Theiler Stages: 17, 19, 20, 21, 23, 28

Assay Type	Results
RNA in situ	8
RT-PCR	15

cDNA source data(9)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(11) Genomic(1) cDNA(9) Primer pair(1)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000021478 (Evidence)
Ensembl Gene Model	ENSMUSG00000026525 (Evidence)
Entrez Gene	13603 (Evidence)
UniGene	32744
DFCI	TC1583169
DoTS	DT.110889018, DT.523084
NIA Mouse Gene Index	U022106
Consensus CDS Project	CCDS15549.1
International Mouse Knockout Project Status	Opn3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000021478	VEGA Gene Model | MGI Sequence Detail	30356	C57BL/6J
transcript	OTTMUST00000050914	VEGA | MGI Sequence Detail	1913	Not Applicable
polypeptide	OTTMUSP00000023881	VEGA | MGI Sequence Detail	400	Not Applicable

All sequences(27) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(220 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR000276	GPCR, rhodopsin-like
InterPro	IPR017452	GPCR, rhodopsin-like, 7TM
InterPro	IPR001760	Opsin
Protein Ontology	PR:000001220	encephalopsin

References

(Earliest) J:54924 Blackshaw S, et al., Encephalopsin: a novel mammalian extraretinal opsin discretely localized in the brain. J Neurosci. 1999 May 15;19(10):3681-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)