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Sdcbp
Gene Detail
 Symbol
Name
ID
Sdcbp
syndecan binding protein
MGI:1337026
Synonyms MDA-9, Sycl, syndecan interacting protein, syntenin, syntenin-1
Feature Type protein coding gene
Genetic Map
Chromosome 4
2.91 cM, cytoband A1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:6365650-6408423 bp, + strand
From VEGA annotation of GRCm38

  42774 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4110  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Sdcbp

Human
homologs
Human Homolog SDCBP, syndecan binding protein (syntenin)
NCBI Gene ID 6386
neXtProt AC  NX_O00560
Human Synonyms  MDA-9, ST1, SYCL, TACIP18
Human Chr (Location)  8q12; chr8:58553169-58582860 (+)  GRCh38
Alleles
and
phenotypes
All alleles(5) : Gene trapped(4) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (28 annotations)
Process positive regulation of phosphorylation, Ras protein signal transduction
Component blood microparticle, cytoplasm, ...
Function cell adhesion molecule binding, ephrin receptor binding, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (55)    Tissues (44)    Images (22)
Theiler Stages: 19, 23, 28
Assay TypeResults
RNA in situ 55
cDNA source data(43)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(44) cDNA(44)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000004316 (Evidence)
Ensembl Gene ModelENSMUSG00000028249 (Evidence)
Entrez Gene53378 (Evidence)
DFCITC1573740, TC1621300, TC1747513
NIA Mouse Gene IndexU004047, U128085
Consensus CDS ProjectCCDS17951.1, CCDS51110.1
International Mouse Knockout Project StatusSdcbp
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000004316 VEGA Gene Model | MGI Sequence Detail 42774 C57BL/6J ±  kb
transcript OTTMUST00000009778 VEGA | MGI Sequence Detail 2745 Not Applicable 
polypeptide OTTMUSP00000004701 VEGA | MGI Sequence Detail 299 Not Applicable 

For the selected sequences
All sequences(133) RefSeq(8) UniProt(17)
Polymorphisms SNPs within 2kb(225 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001478 PDZ domain
Protein Ontology PR:000014554 syntenin-1
References (Earliest) J:113829 Grootjans JJ, et al., Syntenin, a PDZ protein that binds syndecan cytoplasmic domains. Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13683-8
(Latest) J:195897 Jeon HY, et al., Expression patterns of MDA-9/syntenin during development of the mouse embryo. J Mol Histol. 2013 Apr;44(2):159-66
All references(47)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory