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Slc33a1
Gene Detail
Symbol

Name
ID
Slc33a1
solute carrier family 33 (acetyl-CoA transporter), member 1
MGI:1332247
Synonyms
Acatn, D630022N01Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 3
30.08 cM, cytoband E1-E3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:63933507-63964768 bp, - strand
From VEGA annotation of GRCm38

  31262 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3476  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC33A1
Gene Tree: Slc33a1

Human
homologs
SLC33A1, solute carrier family 33 (acetyl-CoA transporter), member 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9197
neXtProt AC: NX_O00400

Human Synonyms: ACATN, AT1, AT-1, CCHLND, SPG42

Human Chr (Location): 3q25.31; chr3:155826511-155854459 (-)  GRCh38.p2

Disease Associations: (2) Diseases Associated with Human SLC33A1

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc33a1 interacts with 208 markers (Mir1b, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (4 records)
Data Summary: Results (22)    Tissues (22)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 22
cDNA source data(84)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase slc33a1 ; ZFIN slc33a1    NEW 
Molecular
reagents
All nucleic(84) cDNA(84)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000026586 (Evidence)
Ensembl Gene Model ENSMUSG00000027822 (Evidence)
Entrez Gene 11416 (Evidence)
UniGene 135619
DFCI TC1599453, TC1574254
DoTS DT.101249590, DT.490215, DT.101388765
NIA Mouse Gene Index U247977, U024110
Consensus CDS Project CCDS17382.1
International Mouse Phenotyping Consortium Status Slc33a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026586 VEGA Gene Model | MGI Sequence Detail 31262 C57BL/6J ±  kb
transcript OTTMUST00000065777 VEGA | MGI Sequence Detail 3150 Not Applicable 
polypeptide OTTMUSP00000032826 VEGA | MGI Sequence Detail 550 Not Applicable 

For the selected sequences
All sequences(42) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(72 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024371 Acetyl-coenzyme A transporter 1
InterPro IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1
InterPro IPR020846 Major facilitator superfamily domain
Protein Ontology PR:000015085 acetyl-coenzyme A transporter 1
References
(Earliest) J:53140 Bora RS, et al., Assignment1 of a putative acetyl-CoA transporter gene (Acatn) to mouse chromosome band 3E1-E3 by in situ hybridization. Cytogenet Cell Genet. 1998;83(1-2):78-9
(Latest) J:211266 Peng Y, et al., Deficient import of acetyl-CoA into the ER lumen causes neurodegeneration and propensity to infections, inflammation, and cancer. J Neurosci. 2014 May 14;34(20):6772-89
All references(38)
Other
accession IDs
MGI:2139668, MGI:2139794, MGI:2442761

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory