Chi3l3
Gene Detail

Symbol Name ID

Chi3l3 chitinase 3-like 3 MGI:1330860

Synonyms

Ym1

Feature Type

protein coding gene

Genetic Map

Chromosome 3

46.49 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr3:106147554-106167564 bp, - strand From VEGA annotation of GRCm38   20011 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:74931  Vertebrate Homology Class
2 mouse; 1 rat

Protein SuperFamily: chitinase-like protein
Gene Tree: Chi3l3

Alleles and phenotypes

All alleles(1) : Targeted(1)

Gene Ontology (GO) classifications

All GO classifications: (13 annotations)

Process	carbohydrate metabolic process, chitin catabolic process, ...
Component	cytoplasm, cytoplasmic membrane-bounded vesicle, ...
Function	beta-N-acetylhexosaminidase activity, carbohydrate binding, ...

External Resources: FuncBase

Expression

Literature Summary: (4 records)
Data Summary: Results (33)    Tissues (8)    Images (1)
Theiler Stages: 20, 22, 24, 25, 26, 28

Assay Type	Results
Immunohistochemistry	1
RT-PCR	32

cDNA source data(19)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(21) cDNA(19) Primer pair(2)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000023699 (Evidence)
Ensembl Gene Model	ENSMUSG00000040809 (Evidence)
Entrez Gene	12655 (Evidence)
UniGene	387173
DFCI	TC1581278
DoTS	DT.97342298
NIA Mouse Gene Index	U064577
PDB	1E9L, 1VF8
Consensus CDS Project	CCDS17718.1
International Mouse Knockout Project Status	Chi3l3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000023699	VEGA Gene Model | MGI Sequence Detail	20011	C57BL/6J
transcript	OTTMUST00000057874	VEGA | MGI Sequence Detail	1539	Not Applicable
polypeptide	OTTMUSP00000027981	VEGA | MGI Sequence Detail	398	Not Applicable

All sequences(31) RefSeq(2) UniProt(5)

Polymorphisms

RFLP(1) : SNPs(94 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR011583	Chitinase II
InterPro	IPR013781	Glycoside hydrolase, catalytic domain
InterPro	IPR001223	Glycoside hydrolase, family 18, catalytic domain
InterPro	IPR017853	Glycoside hydrolase, superfamily
Protein Ontology	PR:000006179	chitinase-3-like protein 3

References

(Earliest) J:51389 Jin HM, et al., Genetic characterization of the murine Ym1 gene and identification of a cluster of highly homologous genes. Genomics. 1998 Dec 1;54(2):316-22
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)

Other accession IDs

MGI:2139747