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Chil3
Gene Detail
 Symbol
Name
ID
Chil3
chitinase-like 3
MGI:1330860
Synonyms Chi3l3, Ym1
Feature Type protein coding gene
Genetic Map
Chromosome 3
46.49 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr3:106147554-106167564 bp, - strand
From VEGA annotation of GRCm38

  20011 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:74931  Vertebrate Homology Class
2 mouse; 1 rat

Protein SuperFamily: chitinase-like protein
Gene Tree: Chil3

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Chil3 interacts with 73 markers (Mir26a-1, Mir26a-2, Mir26b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process carbohydrate metabolic process, chitin catabolic process, ...
Component cytoplasm, cytoplasmic membrane-bounded vesicle, ...
Function beta-N-acetylhexosaminidase activity, carbohydrate binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (33)    Tissues (8)    Images (1)
Theiler Stages: 20, 22, 24, 25, 26, 28
Assay TypeResults
Immunohistochemistry 1
RT-PCR 32
cDNA source data(19)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(21) cDNA(19) Primer pair(2)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023699 (Evidence)
Ensembl Gene ModelENSMUSG00000040809 (Evidence)
Entrez Gene12655 (Evidence)
UniGene387173
DFCITC1581278
DoTSDT.97342298
NIA Mouse Gene IndexU064577
EC3.2.1.52
PDB1E9L, 1VF8
Consensus CDS ProjectCCDS17718.1
International Mouse Knockout Project StatusChil3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023699 VEGA Gene Model | MGI Sequence Detail 20011 C57BL/6J ±  kb
transcript OTTMUST00000057874 VEGA | MGI Sequence Detail 1539 Not Applicable 
polypeptide OTTMUSP00000027981 VEGA | MGI Sequence Detail 398 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(4) UniProt(2)
Polymorphisms RFLP(1) : SNPs within 2kb(110 from dbSNP Build 137)    SNPs within 2kb including multiple locations(122)
Protein-related
information
ResourceIDDescription
InterPro IPR011583 Chitinase II
InterPro IPR013781 Glycoside hydrolase, catalytic domain
InterPro IPR001223 Glycoside hydrolase, family 18, catalytic domain
InterPro IPR017853 Glycoside hydrolase, superfamily
Protein Ontology PR:000006179 chitinase-3-like protein 3
References (Earliest) J:51389 Jin HM, et al., Genetic characterization of the murine Ym1 gene and identification of a cluster of highly homologous genes. Genomics. 1998 Dec 1;54(2):316-22
(Latest) J:202092 Hussain M, et al., New paralogues and revised time line in the expansion of the vertebrate GH18 family. J Mol Evol. 2013 Apr;76(4):240-60
All references(36)
Other
accession IDs
MGI:2139747

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory