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Sprr2c-ps Pseudogene Detail
Summary
  • Symbol
    Sprr2c-ps
  • Name
    small proline-rich protein 2C, pseudogene
  • Synonyms
    Sprr2c
  • Feature Type
    pseudogene
  • IDs
    MGI:1330351
    NCBI Gene: 20757
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr3:92326599-92326829 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 40.14 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    37 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1330351
pseudogene Chr3:92326599-92326900 (+)
129S1/SvImJ MGP_129S1SvImJ_G0012273
pseudogene Chr3:92762113-92762413 (+)
A/J MGP_AJ_G0012267
pseudogene Chr3:89849995-89850295 (+)
AKR/J MGP_AKRJ_G0012234
pseudogene Chr3:91953194-91953494 (+)
BALB/cJ MGP_BALBcJ_G0012250
pseudogene Chr3:89658954-89659254 (+)
C3H/HeJ MGP_C3HHeJ_G0012118
pseudogene Chr3:92174372-92174672 (+)
C57BL/6NJ MGP_C57BL6NJ_G0012562
pseudogene Chr3:96303346-96303646 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0010953
pseudogene Chr3:86487939-86488239 (+)
CAST/EiJ MGP_CASTEiJ_G0011891
pseudogene Chr3:91577389-91577689 (+)
CBA/J MGP_CBAJ_G0012094
pseudogene Chr3:99595842-99596142 (+)
DBA/2J MGP_DBA2J_G0012151
pseudogene Chr3:89166285-89166585 (+)
FVB/NJ MGP_FVBNJ_G0012153
pseudogene Chr3:87335483-87335783 (+)
LP/J MGP_LPJ_G0012221
pseudogene Chr3:93988395-93988695 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0012156
pseudogene Chr3:105841659-105841959 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0012567
pseudogene Chr3:91670946-91671246 (+)
PWK/PhJ MGP_PWKPhJ_G0011737
pseudogene Chr3:89053061-89053361 (+)
SPRET/EiJ MGP_SPRETEiJ_G0011550
pseudogene Chr3:90003377-90003687 (+)
WSB/EiJ MGP_WSBEiJ_G0011921
pseudogene Chr3:92072940-92073240 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Sprr2c-ps
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic 20757 NCBI Gene Model | MGI Sequence Detail 231 C57BL/6J ±  kb
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    Genomic 5

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:52302 Song HJ, et al., Mouse Sprr2 genes: a clustered family of genes showing differential expression in epithelial tissues. Genomics. 1999 Jan 1;55(1):28-42
  • Latest
    J:114772 Hong SH, et al., Estrogen regulates the expression of the small proline-rich 2 gene family in the mouse uterus. Mol Cells. 2004 Jun 30;17(3):477-84

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory