Ccl20
Gene Detail

Symbol Name ID

Ccl20 chemokine (C-C motif) ligand 20 MGI:1329031

Synonyms

CKb4, exodus-1, MIP-3[a], MIP3A, MIP-3A, Scya20, ST38

Feature Type

protein coding gene

Genetic Map

Chromosome 1

42.69 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr1:83116766-83119167 bp, + strand From VEGA annotation of GRCm38   2402 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:3375  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Protein SuperFamily: small inducible chemokine, C/CC types
Gene Tree: Ccl20

Human homologs

Human Homolog		CCL20, chemokine (C-C motif) ligand 20
NCBI Gene ID		6364
neXtProt AC		NX_P78556
Human Synonyms		CKb4, LARC, MIP-3a, MIP3A, MIP-3-alpha, SCYA20, ST38
Human Chr (Location)		2q36.3; chr2:228678558-228682280 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(2) : Targeted(2)

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	chemokinesis, chemotaxis, ...
Component	extracellular region, extracellular space
Function	chemokine activity, cytokine activity, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (24)    Tissues (15)    Images (2)
Theiler Stages: 23

Assay Type	Results
RNA in situ	24

cDNA source data(10)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(11) cDNA(10) Primer pair(1)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000016631 (Evidence)
Ensembl Gene Model	ENSMUSG00000026166 (Evidence)
Entrez Gene	20297 (Evidence)
UniGene	116739
DFCI	TC1586473, TC1618440
DoTS	DT.101715552, DT.486197
PDB	1HA6
Consensus CDS Project	CCDS35632.1
International Mouse Knockout Project Status	Ccl20

Sequences

Length	Strain/Species
genomic	OTTMUSG00000016631	VEGA Gene Model | MGI Sequence Detail	2402	C57BL/6J
transcript	OTTMUST00000040228	VEGA | MGI Sequence Detail	1420	Not Applicable
polypeptide	OTTMUSP00000017966	VEGA | MGI Sequence Detail	103	Not Applicable

All sequences(31) RefSeq(4) UniProt(4)

Polymorphisms

PCR(1) : SNPs(10 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR000827	CC chemokine, conserved site
InterPro	IPR001811	Chemokine interleukin-8-like domain
Protein Ontology	PR:000001992	C-C motif chemokine 20

References

(Earliest) J:51311 Varona R, et al., Molecular cloning, functional characterization and mRNA expression analysis of the murine chemokine receptor CCR6 and its specific ligand MIP-3alpha. FEBS Lett. 1998 Nov 27;440(1-2):188-94
(Latest) J:185240 Lefebvre S, et al., Identification of ectodysplasin target genes reveals the involvement of chemokines in hair development. J Invest Dermatol. 2012 Apr;132(4):1094-102
All references(35)