About   Help   FAQ
Ccl20 Gene Detail
Summary
  • Symbol
    Ccl20
  • Name
    chemokine (C-C motif) ligand 20
  • Synonyms
    CKb4, exodus-1, MIP-3[a], MIP3A, MIP-3A, Scya20, ST38
  • Feature Type
    protein coding gene
  • IDs
    MGI:1329031
    NCBI Gene: 20297
  • Gene Overview
    MyGene.info: CCL20
Location & Maps
more
  • Sequence Map
    Chr1:83116766-83119167 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      2402 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    CCL20, C-C motif chemokine ligand 20
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CCL20, C-C motif chemokine ligand 20
    Orthology source: HGNC, HomoloGene
  • Synonyms
    CKb4, Exodus, LARC, MIP-3a, MIP3A, MIP-3-alpha, SCYA20, ST38
  • Links
    NCBI Gene ID: 6364
    neXtProt AC: NX_P78556

  • Chr Location
    2q36.3; chr2:227813842-227817564 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Ccl20
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016631 VEGA Gene Model | MGI Sequence Detail 2402 C57BL/6J ±  kb
transcript OTTMUST00000040228 VEGA | MGI Sequence Detail 1417 Not Applicable  
polypeptide OTTMUSP00000017966 VEGA | MGI Sequence Detail 102 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    12 from dbSNP Build 142
  • PCR
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000001992 C-C motif chemokine 20
  • PDB
  • InterPro Domains
    IPR000827 CC chemokine, conserved site
    IPR001811 Chemokine interleukin-8-like domain
Molecular
Reagents
less
  • All nucleic 11
    cDNA 10
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 36
    Developmental Gene Expression 3
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:51311 Varona R, et al., Molecular cloning, functional characterization and mRNA expression analysis of the murine chemokine receptor CCR6 and its specific ligand MIP-3alpha. FEBS Lett. 1998 Nov 27;440(1-2):188-94
  • Latest
    J:217542 Obata Y, et al., Epithelial-stromal interaction via Notch signaling is essential for the full maturation of gut-associated lymphoid tissues. EMBO Rep. 2014 Dec;15(12):1297-304

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/26/2016
MGI 6.03
The Jackson Laboratory