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Ccl20
Gene Detail
Symbol

Name
ID
Ccl20
chemokine (C-C motif) ligand 20
MGI:1329031
Synonyms
CKb4, exodus-1, MIP-3[a], MIP3A, MIP-3A, Scya20, ST38
Feature Type
protein coding gene
Genetic Map
Chromosome 1
42.69 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr1:83116766-83119167 bp, + strand
From VEGA annotation of GRCm38

  2402 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3375  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

HCOP human homology predictions: CCL20
Protein SuperFamily: small inducible chemokine, C/CC types
Gene Tree: Ccl20

Human
homologs
CCL20, chemokine (C-C motif) ligand 20
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 6364
neXtProt AC: NX_P78556

Human Synonyms: CKb4, Exodus, LARC, MIP-3a, MIP3A, MIP-3-alpha, SCYA20, ST38

Human Chr (Location): 2q36.3; chr2:227813842-227817564 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ccl20 interacts with 183 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process cell chemotaxis, chemotaxis, ...
Component extracellular region, extracellular space
Function chemokine activity, cytokine activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (24)    Tissues (15)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 24
cDNA source data(10)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100494617 ; ZFIN ccl20b    NEW 
Molecular
reagents
All nucleic(11) cDNA(10) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000016631 (Evidence)
Ensembl Gene Model ENSMUSG00000026166 (Evidence)
Entrez Gene 20297 (Evidence)
UniGene 116739
DFCI TC1586473, TC1618440
DoTS DT.101715552, DT.486197
NIA Mouse Gene Index U000512
PDB 1HA6
Consensus CDS Project CCDS35632.1
International Mouse Phenotyping Consortium Status Ccl20
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016631 VEGA Gene Model | MGI Sequence Detail 2402 C57BL/6J ±  kb
transcript OTTMUST00000040228 VEGA | MGI Sequence Detail 1417 Not Applicable 
polypeptide OTTMUSP00000017966 VEGA | MGI Sequence Detail 102 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(8) UniProt(4)
Polymorphisms
PCR(1) : SNPs within 2kb(12 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000827 CC chemokine, conserved site
InterPro IPR001811 Chemokine interleukin-8-like domain
Protein Ontology PR:000001992 C-C motif chemokine 20
References
(Earliest) J:51311 Varona R, et al., Molecular cloning, functional characterization and mRNA expression analysis of the murine chemokine receptor CCR6 and its specific ligand MIP-3alpha. FEBS Lett. 1998 Nov 27;440(1-2):188-94
(Latest) J:217542 Obata Y, et al., Epithelial-stromal interaction via Notch signaling is essential for the full maturation of gut-associated lymphoid tissues. EMBO Rep. 2014 Dec;15(12):1297-304
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory