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Ccl20 Gene Detail
Summary
  • Symbol
    Ccl20
  • Name
    C-C motif chemokine ligand 20
  • Synonyms
    CKb4, exodus-1, MIP-3[a], MIP-3A, MIP3A, Scya20, ST38
  • Feature Type
    protein coding gene
  • IDs
    MGI:1329031
    NCBI Gene: 20297
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:83094487-83096888 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 42.69 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    117 from dbSNP Build 142
  • Strain Annotations
    19
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1329031
 protein coding gene Chr1:83094487-83096888 (+)
129S1/SvImJ ENSMUSG00200034246
 protein coding gene Chr1:80768609-80771010 (+)
A/J ENSMUSG00195009159
 protein coding gene Chr1:80171108-80173509 (+)
AKR/J ENSMUSG00220010206
 protein coding gene Chr1:80354672-80357073 (+)
BALB/cJ ENSMUSG00180016828
 protein coding gene Chr1:80442821-80445222 (+)
C3H/HeJ ENSMUSG00175016471
 protein coding gene Chr1:80577245-80579646 (+)
C57BL/6NJ ENSMUSG00215015221
 protein coding gene Chr1:80490965-80493366 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014334
 protein coding gene Chr1:76287238-76289689 (+)
CAST/EiJ ENSTCUG00005025180
 protein coding gene Chr1:80174545-80176950 (+)
CBA/J ENSMUSG00210032605
 protein coding gene Chr1:80352142-80354543 (+)
DBA/2J ENSMUSG00185029615
 protein coding gene Chr1:81399613-81402014 (+)
FVB/NJ ENSMUSG00205032231
 protein coding gene Chr1:79915475-79917876 (+)
JF1/MsJ ENSUMUG00000004008
 protein coding gene Chr1:80215604-80218009 (+)
LP/J ENSMUSG00230013407
 protein coding gene Chr1:81335755-81338156 (+)
NOD/ShiLtJ ENSMUSG00190025240
 protein coding gene Chr1:80555691-80558092 (+)
NZO/HlLtJ ENSMUSG00225004135
 protein coding gene Chr1:84581098-84583499 (+)
PWK/PhJ ENSLUMG00010012795
 protein coding gene Chr1:79839299-79841704 (+)
SPRET/EiJ ENSMSPG00010039128
 protein coding gene Chr1:81966982-81969384 (+)
WSB/EiJ ENSIUOG00005012716
 protein coding gene Chr1:80136418-80138819 (+)



Homology
more
  • Human Ortholog
    CCL20, C-C motif chemokine ligand 20
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCL20, C-C motif chemokine ligand 20
  • Synonyms
    CKb4, Exodus, LARC, MIP-3a, MIP3A, MIP-3-alpha, SCYA20, ST38
  • Links
    NCBI Gene ID: 6364
    UniProt: P78556

  • Chr Location
    2q36.3; chr2:227805739-227817564 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    35
  • GO References
    12
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    625
  • Tissues
    17
  • cDNA Data
    12
  • Literature Summary
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 20297 NCBI Gene Model | MGI Sequence Detail 2402 C57BL/6J ±  kb
transcript NM_016960 RefSeq | MGI Sequence Detail 852 ZRU/MplStud  
polypeptide O89093 UniProt | EBI | MGI Sequence Detail 97 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 12
    Primer pair 2

    Microarray probesets 2
References
more
  • Summaries
    All 136
    Developmental Gene Expression 9
    Gene Ontology 12
    Phenotypes 17
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:387986 Lawler W, et al., Impact of obesity on the CCR6-CCL20 axis in epidermal gammadelta T cells and IL-17A production in murine wound healing and psoriasis. J Immunol. 2025 Jan 1;214(1):153-166
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory