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Arid3a Gene Detail
Summary
  • Symbol
    Arid3a
  • Name
    AT-rich interaction domain 3A
  • Synonyms
    Bright, Dri1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1328360
    NCBI Gene: 13496
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:79762877-79790852 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 10, 39.72 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1328360
protein coding gene Chr10:79762877-79790852 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017472
protein coding gene Chr10:80492259-80523534 (+)
A/J MGP_AJ_G0017450
protein coding gene Chr10:77682875-77711454 (+)
AKR/J MGP_AKRJ_G0017411
protein coding gene Chr10:79800614-79828431 (+)
BALB/cJ MGP_BALBcJ_G0017412
protein coding gene Chr10:77909032-77937786 (+)
C3H/HeJ MGP_C3HHeJ_G0017235
protein coding gene Chr10:79904400-79933699 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017866
protein coding gene Chr10:83271360-83303220 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015554
protein coding gene Chr10:73908361-73936876 (+)
CAST/EiJ MGP_CASTEiJ_G0016802
protein coding gene Chr10:80094116-80126779 (+)
CBA/J MGP_CBAJ_G0017207
protein coding gene Chr10:86494178-86528622 (+)
DBA/2J MGP_DBA2J_G0017313
protein coding gene Chr10:76897766-76927407 (+)
FVB/NJ MGP_FVBNJ_G0017307
protein coding gene Chr10:76075795-76106135 (+)
LP/J MGP_LPJ_G0017384
protein coding gene Chr10:80969367-80999794 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017333
protein coding gene Chr10:88465710-88496457 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017907
protein coding gene Chr10:79788180-79815996 (+)
PWK/PhJ MGP_PWKPhJ_G0016583
protein coding gene Chr10:76763480-76792404 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016372
protein coding gene Chr10:78758531-78787763 (+)
WSB/EiJ MGP_WSBEiJ_G0016862
protein coding gene Chr10:79810603-79839393 (+)



Homology
more
  • Human Ortholog
    ARID3A, AT-rich interaction domain 3A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ARID3A, AT-rich interaction domain 3A
  • Synonyms
    BRIGHT, DRIL1, DRIL3, E2FBP1
  • Links
    NCBI Gene ID: 1820
    neXtProt AC: NX_Q99856
    UniProt: Q99856

  • Chr Location
    19p13.3; chr19:925732-975939 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    41 phenotypes from 2 alleles in 2 genetic backgrounds
    1 phenotype from multigenic genotypes
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit embryonic lethality between E11.5 and E13.5 due to impaired erythropoiesis.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 13496 NCBI Gene Model | MGI Sequence Detail 27976 C57BL/6J ±  kb
    transcript NM_007880 RefSeq | MGI Sequence Detail 5361 C57BL/6  
    polypeptide Q62431 UniProt | EBI | MGI Sequence Detail 601 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 34
      Genomic 1
      cDNA 31
      Primer pair 2

      Microarray probesets 3
    References
    more
    • Summaries
      All 65
      Developmental Gene Expression 11
      Gene Ontology 6
      Phenotypes 18
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:327875 Shinton SA, et al., Pla2g2a promotes innate Th2-type immunity lymphocytes to increase B1a cells. Sci Rep. 2022 Sep 1;12(1):14899

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    03/12/2024
    MGI 6.23
    The Jackson Laboratory