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Arid3a
Gene Detail
Symbol

Name
ID
Arid3a
AT rich interactive domain 3A (BRIGHT-like)
MGI:1328360
Synonyms
Bright, Dri1
Feature Type
protein coding gene
Genetic Map
Chromosome 10
39.72 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:79927043-79955018 bp, + strand
From VEGA annotation of GRCm38

  27976 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:124247  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Arid3a

Human
homologs
Human Homolog ARID3A, AT rich interactive domain 3A (BRIGHT-like)
NCBI Gene ID 1820
neXtProt AC  NX_Q99856
Human Synonyms  BRIGHT, DRIL1, DRIL3, E2FBP1
Human Chr (Location)  19p13.3; chr19:925733-972816 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(1) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele exhibit embryonic lethality between E11.5 and E13.5 due to impaired erythropoiesis.
 
Interactions
Arid3a interacts with 284 markers (Mir7-1, Mir18, Mir19a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (8 records)
Data Summary: Results (100)    Tissues (78)    Images (14)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 92
RT-PCR 8
cDNA source data(30)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(32) Genomic(1) cDNA(30) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023712 (Evidence)
Ensembl Gene ModelENSMUSG00000019564 (Evidence)
Entrez Gene13496 (Evidence)
UniGene301282
DFCITC1598281, TC1635108, TC1638176
DoTSDT.101162909, DT.110630002, DT.87068442, DT.94355440
NIA Mouse Gene IndexU011730
Consensus CDS ProjectCCDS23999.1
International Mouse Knockout Project StatusArid3a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023712 VEGA Gene Model | MGI Sequence Detail 27976 C57BL/6J ±  kb
transcript OTTMUST00000057907 VEGA | MGI Sequence Detail 5361 Not Applicable 
polypeptide OTTMUSP00000028002 VEGA | MGI Sequence Detail 601 Not Applicable 

For the selected sequences
All sequences(51) RefSeq(10) UniProt(2)
Polymorphisms
SNPs within 2kb(47 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001606 ARID/BRIGHT DNA-binding domain
InterPro IPR023334 REKLES domain
Protein Ontology PR:000004265 AT-rich interactive domain-containing protein 3A
References
(Earliest) J:51742 Herrscher RF, et al., The immunoglobulin heavy-chain matrix-associating regions are bound by Bright: a B cell-specific trans-activator that describes a new DNA-binding protein family. Genes Dev. 1995 Dec 15;9(24):3067-82
(Latest) J:209112 Shimizu H, et al., The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PLoS One. 2013;8(10):e75754
All references(47)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory